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1. Microbial roles in the terrestrial carbon dynamics during 1901-2016 as simulated by the CLM-Microbe model

   He, Liyuan; Rodrigues, Jorge L.; Mayes, Melanie A; Lai, Chun-Ta; Lipson, David; Xu, Xiaofeng (December 2022, AGU fall meeting)

   We applied a microbial-explicit model – the CLM-Microbe – to investigate the dynamics of C in vegetation, litter, soil, and microbes during 1901-2016. The CLM-Microbe model was able to reproduce global averages and latitudinal trends of gross (GPP) and net (NPP) primary productivity, heterotrophic (HR) and soil (SR) respiration, biomass C in fungi (FBC) and bacteria (BBC) in the top 30 cm and 1 m, dissolved (DOC) and soil organic C (SOC) in the top 30 cm and 1 m. In addition, the CLM-Microbe model captured the grid-level variation in GPP (R2=0.78), NPP (R2=0.63), SR (R2=0.26), HR (R2=0.23), DOC in 0-30 cm (R2=0.2) and 0-1 m (R2=0.22), SOC in 0-30 cm (R2=0.36) and 0-1 m (R2=0.26), FBC (R2=0.22) and BBC (R2=0.32) in 0-30 cm, and MBC in 0-1 m (R2=0.21). From the 1900s to 2007-2016, simulated C variables increased by approximately 30 PgC yr-1 for GPP, 15 PgC yr-1 for NPP, 12 PgC yr-1 for HR, 25 PgC yr-1 for SR, 1.0 PgC for FBC and 0.4 PgC for BBC in 0-30 cm, 1.5 PgC for FBC, 0.8 PgC for BBC, 2.5 PgC for DOC, 40 PgC for SOC, and 5 PgC for litter C in 0-1 m, and 40 PgC for vegetation C. The relative increases in C fluxes and pools varied across the globe. Increases in vegetation C were closely related to warming and increased precipitation, while C accumulation in microbes and soils was jointly governed by vegetation C input and soil temperature and moisture. 

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2. Macroecology Differentiation Between Bacteria and Fungi in Topsoil Across the United States

   https://doi.org/10.1029/2023GB007706  

   He, Liyuan; Viovy, Nicolas; Xu, Xiaofeng (October 2023, Global Biogeochemical Cycles)

   Abstract Bacteria and fungi possess distinct physiological traits. Their macroecology is vital for ecosystem functioning such as carbon cycling. However, bacterial and fungal biogeography and underlying mechanisms remain elusive. In this study, we investigated bacterial versus fungal macroecology by integrating a microbial‐explicit model—CLM‐Microbe—with measured fungal (FBC) and bacterial biomass carbon (BBC) from 34 NEON sites. The distribution of FBC, BBC, and FBC: BBC (F:B) ratio was well simulated across sites, with variations in 99% (P < 0.001), 97% (P < 0.001), and 99% (P < 0.001) being explained by the CLM‐Microbe model, respectively. We found stronger biogeographic patterns of FBC relative to BBC across the United States. Fungal and bacterial turnover rates showed similar trends along latitude. However, latitudinal trends of their component fluxes (carbon assimilation, respiration, and necromass production) were distinct between bacteria and fungi, with those latitudinal trends following inverse unimodal patterns for fungi and showing exponential declining responses for bacteria. Carbon assimilation was dominated by vegetation productivity, and respiration was dominated by mean annual temperature for bacteria and fungi. The dominant factor for their necromass production differs, with edaphic factors controlling fungal and mean annual temperature controlling bacterial processes. The understanding of fungal and bacterial macroecology is an important step toward linking microbial metabolism and soil biogeochemical processes. Distinct fungal and bacterial macroecology contributes to the microbial ecology, particularly on microbial community structure and its association with ecosystem carbon cycling across space. 

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3. Hydrologic Export of Soil Organic Carbon: Continental Variation and Implications

   https://doi.org/10.1029/2021GB007161  

   Hararuk, O.; Jones, S. E.; Solomon, C. T. (June 2022, Global Biogeochemical Cycles)

   Abstract Soil is the largest terrestrial carbon (C) reservoir and a large potential source or sink of atmospheric CO_₂. Soil C models have usually focused on refining representations of microbe‐mediated C turnover, whereas lateral hydrologic C fluxes have largely been ignored at regional and global scales. Here, we provide large‐scale estimates of hydrologic export of soil organic carbon (SOC) and its effects on bulk soil C turnover rates. Hydrologic export of SOC ranged from nearly 0 to 12 g C m⁻²yr⁻¹amongst catchments across the conterminous United States, and total export across this region was 14 (95% CI 4‐41) Tg C/yr. The proportion of soil C turnover attributed to hydrologic export ranged from <1% to 20%, and averaged 0.97% (weighted by catchment area; 95% CI 0.3%–2.6%), with the lowest values in arid catchments. Ignoring hydrologic export in C cycle models might lead to overestimation of SOC stocks by 0.3–2.6 Pg C for the conterminous United States. High uncertainty in hydrologic C export fluxes and potentially substantial effects on soil C turnover illustrate the need for research aimed at improving our mechanistic understanding of the processes regulating hydrologic C export. 

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4. Hemp biochar impacts on selected biological soil health indicators across different soil types and moisture cycles

   https://doi.org/10.1371/journal.pone.0264620  

   Atoloye, Idowu A.; Adesina, Ifeoluwa S.; Sharma, Harmandeep; Subedi, Kiran; Liang, Chyi-Lyi; Shahbazi, Abolghasem; Bhowmik, Arnab (February 2022, PLOS ONE)

   Peña-Fernández, Antonio (Ed.)

   Application of crop residues and biochar have been demonstrated to improve soil biological and chemical properties in agroecosystems. However, the integrated effect of organic amendments and hydrological cycles on soil health indicators are not well understood. In this study, we quantified the impact of hemp residue (HR), hemp biochar (HB), and hardwood biochar (HA) on five hydrolytic enzymes, soil microbial phospholipid (PLFA) community structure, pH, permanganate oxidizable carbon (POXC) soil organic carbon (SOC), and total nitrogen (TN). We compared two soil types, Piedmont and Coastal Plain soils of North Carolina, under (i) a 30-d moisture cycle maintained at 60% water-filled pore space (WFPS) (D-W1), followed by (ii) a 7-day alternate dry-wet cycle for 42 days (D-W2), or (iii) maintained at 60% WFPS for 42 days (D-W3) during an aerobic laboratory incubation. Results showed that HR and HB significantly increased the geometric mean enzyme activity by 1-2-fold in the Piedmont soil under the three moisture cycles and about 1.5-fold under D-W in the Coastal soil. In the presence of HA, the measured soil enzyme activities were significantly lower than control under the moisture cycles in both soil types. The shift in microbial community structure was distinct in the Coastal soil but not in the Piedmont soil. Under D-W2, HR and HB significantly increased POXC (600–700 mg POXC kg -1 soil) in the Coastal soil but not in the Piedmont soil while HA increased nitrate (8 mg kg -1 ) retention in the Coastal soil. The differences in amendment effect on pH SOC, TN, POXC, and nitrate were less distinct in the fine-textured Piedmont soil than the coarse-textured Coastal soil. Overall, the results indicate that, unlike HA, HR and HB will have beneficial effects on soil health and productivity, therefore potentially improving soil’s resilience to changing climate. 

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5. The effect of repeated hurricanes on the age of organic carbon in humid tropical forest soil

   https://doi.org/10.1111/gcb.17265  

   Mayer, Allegra C; McFarlane, Karis J; Silver, Whendee L (April 2024, Global Change Biology)

   Abstract Increasing hurricane frequency and intensity with climate change is likely to affect soil organic carbon (C) stocks in tropical forests. We examined the cycling of C between soil pools and with depth at the Luquillo Experimental Forest in Puerto Rico in soils over a 30‐year period that spanned repeated hurricanes. We used a nonlinear matrix model of soil C pools and fluxes (“soilR”) and constrained the parameters with soil and litter survey data. Soil chemistry and stable and radiocarbon isotopes were measured from three soil depths across a topographic gradient in 1988 and 2018. Our results suggest that pulses and subsequent reduction of inputs caused by severe hurricanes in 1989, 1998, and two in 2017 led to faster mean transit times of soil C in 0–10 cm and 35–60 cm depths relative to a modeled control soil with constant inputs over the 30‐year period. Between 1988 and 2018, the occluded C stock increased and δ¹³C in all pools decreased, while changes in particulate and mineral‐associated C were undetectable. The differences between 1988 and 2018 suggest that hurricane disturbance results in a dilution of the occluded light C pool with an influx of young, debris‐deposited C, and possible microbial scavenging of old and young C in the particulate and mineral‐associated pools. These effects led to a younger total soil C pool with faster mean transit times. Our results suggest that the increasing frequency of intense hurricanes will speed up rates of C cycling in tropical forests, making soil C more sensitive to future tropical forest stressors. 

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