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Schistosomiasis is a debilitating parasitic disease of poverty that affects more than 200 million people worldwide, mostly in sub-Saharan Africa, and is clearly associated with the construction of dams and water resource management infrastructure in tropical and subtropical areas. Changes to hydrology and salinity linked to water infrastructure development may create conditions favorable to the aquatic vegetation that is suitable habitat for the intermediate snail hosts of schistosome parasites. With thousands of small and large water reservoirs, irrigation canals, and dams developed or under construction in Africa, it is crucial to accurately assess the spatial distribution of high-risk environments that are habitat for freshwater snail intermediate hosts of schistosomiasis in rapidly changing ecosystems. Yet, standard techniques for monitoring snails are labor-intensive, time-consuming, and provide information limited to the small areas that can be manually sampled. Consequently, in low-income countries where schistosomiasis control is most needed, there are formidable challenges to identifying potential transmission hotspots for targeted medical and environmental interventions. In this study, we developed a new framework to map the spatial distribution of suitable snail habitat across large spatial scales in the Senegal River Basin by integrating satellite data, high-definition, low-cost drone imagery, and an artificial intelligence (AI)-powered computer vision technique called semantic segmentation. A deep learning model (U-Net) was built to automatically analyze high-resolution satellite imagery to produce segmentation maps of aquatic vegetation, with a fast and robust generalized prediction that proved more accurate than a more commonly used random forest approach. Accurate and up-to-date knowledge of areas at highest risk for disease transmission can increase the effectiveness of control interventions by targeting habitat of disease-carrying snails. With the deployment of this new framework, local governments or health actors might better target environmental interventions to where and when they are most needed in an integrated effort to reach the goal of schistosomiasis elimination.
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Semantic Segmentation and Classification of Active and Abandoned Agricultural Fields through Deep Learning in the Southern Peruvian Andes
The monumental scale agricultural infrastructure systems built by Andean peoples during pre-Hispanic times have enabled intensive agriculture in the high-relief, arid/semi-arid landscape of the Southern Peruvian Andes. Large tracts of these labor-intensive systems have been abandoned, however, owing in large measure to a range of demographic, economic, and political crises precipitated by the Spanish invasion of the 16th century CE. This research seeks to better understand the dynamics of agricultural intensification and deintensification in the Andes by inventorying through the semantic segmentation of active and abandoned agricultural fields in satellite imagery across approximately 77,000 km2 of the Southern Peruvian Highlands. While manual digitization of agricultural fields in satellite imagery is time-consuming and labor-intensive, deep learning-based semantic segmentation makes it possible to map and classify en masse Andean agricultural infrastructure. Using high resolution satellite imagery, training and validation data were manually produced in distributed sample areas and were used to transfer-train a convolutional neural network for semantic segmentation. The resulting dataset was compared to manual surveys of the region and results suggest that deep learning can generate larger and more accurate datasets than those generated by hand.
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- Award ID(s):
- 2106717
- PAR ID:
- 10568819
- Publisher / Repository:
- MDPI
- Date Published:
- Journal Name:
- Remote Sensing
- Volume:
- 16
- Issue:
- 19
- ISSN:
- 2072-4292
- Page Range / eLocation ID:
- 3546
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.3390/rs16193546
