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1. Geography and ecology shape the phylogenetic composition of Amazonian tree communities

   https://doi.org/10.1111/jbi.14816  

   Luize, Bruno Garcia; Bauman, David; ter_Steege, Hans; Palma‐Silva, Clarisse; do_Amaral, Iêda Leão; de_Souza Coelho, Luiz; de_Almeida Matos, Francisca Dionízia; de_Andrade Lima Filho, Diógenes; Salomão, Rafael P; Wittmann, Florian; et al (July 2024, Journal of Biogeography)

   Abstract AimAmazonia hosts more tree species from numerous evolutionary lineages, both young and ancient, than any other biogeographic region. Previous studies have shown that tree lineages colonized multiple edaphic environments and dispersed widely across Amazonia, leading to a hypothesis, which we test, that lineages should not be strongly associated with either geographic regions or edaphic forest types. LocationAmazonia. TaxonAngiosperms (Magnoliids; Monocots; Eudicots). MethodsData for the abundance of 5082 tree species in 1989 plots were combined with a mega‐phylogeny. We applied evolutionary ordination to assess how phylogenetic composition varies across Amazonia. We used variation partitioning and Moran's eigenvector maps (MEM) to test and quantify the separate and joint contributions of spatial and environmental variables to explain the phylogenetic composition of plots. We tested the indicator value of lineages for geographic regions and edaphic forest types and mapped associations onto the phylogeny. ResultsIn the terra firme and várzea forest types, the phylogenetic composition varies by geographic region, but the igapó and white‐sand forest types retain a unique evolutionary signature regardless of region. Overall, we find that soil chemistry, climate and topography explain 24% of the variation in phylogenetic composition, with 79% of that variation being spatially structured (R² = 19% overall for combined spatial/environmental effects). The phylogenetic composition also shows substantial spatial patterns not related to the environmental variables we quantified (R² = 28%). A greater number of lineages were significant indicators of geographic regions than forest types. Main ConclusionNumerous tree lineages, including some ancient ones (>66 Ma), show strong associations with geographic regions and edaphic forest types of Amazonia. This shows that specialization in specific edaphic environments has played a long‐standing role in the evolutionary assembly of Amazonian forests. Furthermore, many lineages, even those that have dispersed across Amazonia, dominate within a specific region, likely because of phylogenetically conserved niches for environmental conditions that are prevalent within regions. 

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2. Untangling the importance of niche breadth and niche position as drivers of tree species abundance and occupancy across biogeographic regions

   https://doi.org/10.1111/geb.13139  

   Vela Díaz, Dilys M.; Blundo, Cecilia; Cayola, Leslie; Fuentes, Alfredo F.; Malizia, Lucio R.; Myers, Jonathan A.; Pither, ed., Jason (June 2020, Global Ecology and Biogeography)

   Abstract AimEcological niches shape species commonness and rarity, yet, the relative importance of different niche mechanisms within and across ecosystems remains unresolved. We tested the influence of niche breadth (range of environmental conditions where species occur) and niche position (marginality of a species’ environmental distribution relative to the mean environmental conditions of a region) on tree‐species abundance and occupancy across three biogeographic regions. LocationArgentinian Andes; Bolivian Amazon; Missouri Ozarks. Time period2002–2010. Major taxa studiedTrees. MethodsWe calculated abiotic‐niche breadths and abiotic‐niche positions using 16 climate, soil and topographic variables. For each region, we used model selection to test the relative influence of niche breadth and niche position on local abundance and occupancy in regional‐scale networks of 0.1‐ha forest plots. To account for species–environment associations caused by other mechanisms (e.g., dispersal), we used null models that randomized associations between species occurrences and environmental variables. ResultsWe found strong support for the niche‐position hypothesis. In all regions, species with higher local abundance and occupancy occurred in non‐marginal environments. Observed relationships between occupancy and niche position also differed from random species–environment associations in all regions. Surprisingly, we found little support for the niche‐breadth hypothesis. Observed relationships between both local abundance and niche breadth, and occupancy and niche breadth, did not differ from random species–environment associations. Main conclusionNiche position was more important than niche breadth in shaping species commonness and rarity across temperate, sub‐tropical and tropical forests. In all forests, tree species with widespread geographic distributions were associated with environmental conditions commonly found throughout the region, suggesting that niche position has similar effects on species occupancy across contrasting biogeographic regions. Our findings imply that conservation efforts aimed at protecting populations of common and rare tree species should prioritize conservation of both common and rare habitats. 

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3. Local hydrological conditions influence tree diversity and composition across the Amazon basin

   https://doi.org/10.1111/ecog.06125  

   Marca‐Zevallos, Manuel J.; Moulatlet, Gabriel M.; Sousa, Thaiane R.; Schietti, Juliana; Coelho, Luiz de; Ramos, José Ferreira; Lima Filho, Diogenes de; Amaral, Iêda Leão; de Almeida Matos, Francisca Dionízia; Rincón, Lorena M.; et al (November 2022, Ecography)

   Tree diversity and composition in Amazonia are known to be strongly determined by the water supplied by precipitation. Nevertheless, within the same climatic regime, water availability is modulated by local topography and soil characteristics (hereafter referred to as local hydrological conditions), varying from saturated and poorly drained to well‐drained and potentially dry areas. While these conditions may be expected to influence species distribution, the impacts of local hydrological conditions on tree diversity and composition remain poorly understood at the whole Amazon basin scale. Using a dataset of 443 1‐ha non‐flooded forest plots distributed across the basin, we investigate how local hydrological conditions influence 1) tree alpha diversity, 2) the community‐weighted wood density mean (CWM‐wd) – a proxy for hydraulic resistance and 3) tree species composition. We find that the effect of local hydrological conditions on tree diversity depends on climate, being more evident in wetter forests, where diversity increases towards locations with well‐drained soils. CWM‐wd increased towards better drained soils in Southern and Western Amazonia. Tree species composition changed along local soil hydrological gradients in Central‐Eastern, Western and Southern Amazonia, and those changes were correlated with changes in the mean wood density of plots. Our results suggest that local hydrological gradients filter species, influencing the diversity and composition of Amazonian forests. Overall, this study shows that the effect of local hydrological conditions is pervasive, extending over wide Amazonian regions, and reinforces the importance of accounting for local topography and hydrology to better understand the likely response and resilience of forests to increased frequency of extreme climate events and rising temperatures. 

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4. Fruit secondary metabolites alter the quantity and quality of a seed dispersal mutualism

   https://doi.org/10.1002/ecy.4032  

   Nelson, Annika S.; Gelambi, Mariana; Morales‐M., Estefania; Whitehead, Susan R. (March 2023, Ecology)

   Abstract Plant secondary metabolites are key mechanistic drivers of species interactions. These metabolites have primarily been studied for their role in defense, but they can also have important consequences for mutualisms, including seed dispersal. Although the primary function of fleshy fruits is to attract seed‐dispersing animals, fruits often contain complex mixtures of toxic or deterrent secondary metabolites that can reduce the quantity or quality of seed dispersal mutualisms. Furthermore, because seeds are often dispersed across multiple stages by several dispersers, the net consequences of fruit secondary metabolites for the effectiveness of seed dispersal and ultimately plant fitness are poorly understood. Here, we tested the effects of amides, nitrogen‐based defensive compounds common in fruits of the neotropical plant genusPiper(Piperaceae), on seed dispersal effectiveness (SDE) by ants, which are common secondary seed dispersers. We experimentally added amide extracts toPiperfruits both in the field and lab, finding that amides reduced the quantity of secondary seed dispersal by reducing ant recruitment (87%) and fruit removal rates (58% and 66% in the field and lab, respectively). Moreover, amides not only reduced dispersal quantity but also altered seed dispersal quality by shifting the community composition of recruiting ants (notably by reducing the recruitment of the most effective disperser by 90% but having no detectable effect on the recruitment of a cheater species that removes fruit pulp without dispersing seeds). Although amides did not affect the distance ants initially carried seeds, they altered the quality of seed dispersal by reducing the likelihood of ants cleaning seeds (67%) and increasing their likelihood of ants redispersing seeds outside of the nest (200%). Overall, these results demonstrate that secondary metabolites can alter the effectiveness of plant mutualisms, by both reducing mutualism quantity and altering mutualism quality through multiple mechanisms. These findings present a critical step in understanding the factors mediating the outcomes of seed dispersal and, more broadly, demonstrate the importance of considering how defensive secondary metabolites influence the outcomes of mutualisms surrounding plants. 

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5. Mapping density, diversity and species-richness of the Amazon tree flora

   https://doi.org/10.1038/s42003-023-05514-6  

   ter_Steege, Hans; Pitman, Nigel_C A; do_Amaral, Iêda Leão; de_Souza_Coelho, Luiz; de_Almeida_Matos, Francisca Dionízia; de_Andrade_Lima_Filho, Diógenes; Salomão, Rafael P; Wittmann, Florian; Castilho, Carolina V; Guevara, Juan Ernesto; et al (December 2023, Communications Biology)

   Abstract Using 2.046 botanically-inventoried tree plots across the largest tropical forest on Earth, we mapped tree species-diversity and tree species-richness at 0.1-degree resolution, and investigated drivers for diversity and richness. Using only location, stratified by forest type, as predictor, our spatial model, to the best of our knowledge, provides the most accurate map of tree diversity in Amazonia to date, explaining approximately 70% of the tree diversity and species-richness. Large soil-forest combinations determine a significant percentage of the variation in tree species-richness and tree alpha-diversity in Amazonian forest-plots. We suggest that the size and fragmentation of these systems drive their large-scale diversity patterns and hence local diversity. A model not using location but cumulative water deficit, tree density, and temperature seasonality explains 47% of the tree species-richness in the terra-firme forest in Amazonia. Over large areas across Amazonia, residuals of this relationship are small and poorly spatially structured, suggesting that much of the residual variation may be local. The Guyana Shield area has consistently negative residuals, showing that this area has lower tree species-richness than expected by our models. We provide extensive plot meta-data, including tree density, tree alpha-diversity and tree species-richness results and gridded maps at 0.1-degree resolution. 

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