Abstract Human impacts have led to dramatic biodiversity change which can be highly scale‐dependent across space and time. A primary means to manage these changes is via passive (here, the removal of disturbance) or active (management interventions) ecological restoration. The recovery of biodiversity, following the removal of disturbance, is often incomplete relative to some kind of reference target. The magnitude of recovery of ecological systems following disturbance depends on the landscape matrix and many contingent factors. Inferences about recovery after disturbance and biodiversity change depend on the temporal and spatial scales at which biodiversity is measured.We measured the recovery of biodiversity and species composition over 33 years in 17 temperate grasslands abandoned after agriculture at different points in time, collectively forming a chronosequence since abandonment from 1 to 80 years. We compare these abandoned sites with known agricultural land‐use histories to never‐disturbed sites as relative benchmarks. We specifically measured aspects of diversity at the local plot‐scale (α‐scale, 0.5 m2) and site‐scale (γ‐scale, 10 m2), as well as the within‐site heterogeneity (β‐diversity) and among‐site variation in species composition (turnover and nestedness).At our α‐scale, sites recovering after agricultural abandonment only had 70% of the plant species richness (and ~30% of the evenness), compared to never‐ploughed sites. Within‐site β‐diversity recovered following agricultural abandonment to around 90% after 80 years. This effect, however, was not enough to lead to recovery at our γ‐scale. Richness in recovering sites was ~65% of that in remnant never‐ploughed sites. The presence of species characteristic of the never‐disturbed sites increased in the recovering sites through time. Forb and legume cover declines in years since abandonment, relative to graminoid cover across sites.Synthesis.We found that, during the 80 years after agricultural abandonment, old fields did not recover to the level of biodiversity in remnant never‐ploughed sites at any scale. β‐diversity recovered more than α‐scale or γ‐scale. Plant species composition recovered, but not completely, over time, and some species groups increased their cover more than others. Patterns of ecological recovery in degraded ecosystems across space and long time‐scales can inform targeted active restoration interventions and perhaps, lead to better outcomes. 
                        more » 
                        « less   
                    
                            
                            Graphical representation of landscape heterogeneity identification through unsupervised acoustic analysis
                        
                    
    
            Abstract Changes in land use and climate change threaten global biodiversity and ecosystems, calling for the urgent development of effective conservation strategies. Recognizing landscape heterogeneity, which refers to the variation in natural features within an area, is crucial for these strategies. While remote sensing images quantify landscape heterogeneity, they might fail to detect ecological patterns in moderately disturbed areas, particularly at minor spatial scales. This is partly because satellite imagery may not effectively capture undergrowth conditions due to its resolution constraints. In contrast, soundscape analysis, which studies environmental acoustic signals, emerges as a novel tool for understanding ecological patterns, providing reliable information on habitat conditions and landscape heterogeneity in complex environments across diverse scales and serving as a complement to remote sensing methods.We propose an unsupervised approach using passive acoustic monitoring data and network inference methods to analyse acoustic heterogeneity patterns based on biophony composition. This method uses sonotypes, unique acoustic entities characterized by their specific time‐frequency spaces, to establish the acoustic structure of a site through sonotype occurrences, focusing on general biophony rather than specific species and providing information on the acoustic footprint of a site. From a sonotype composition matrix, we use the Graphical Lasso method, a sparse Gaussian graphical model, to identify acoustic similarities across sites, map ecological complexity relationships through the nodes (sites) and edges (similarities), and transform acoustic data into a graphical representation of ecological interactions and landscape acoustic diversity.We implemented the proposed method across 17 sites within an oil palm plantation in Santander, Colombia. The resulting inferred graphs visualize the acoustic similarities among sites, reflecting the biophony achieved by characterizing the landscape through its acoustic structures. Correlating our findings with ecological metrics like the Bray–Curtis dissimilarity index and satellite imagery indices reveals significant insights into landscape heterogeneity.This unsupervised approach offers a new perspective on understanding ecological and biological interactions and advances soundscape analysis. The soundscape decomposition into sonotypes underscores the method's advantage, offering the possibility to associate sonotypes with species and identify their contribution to the similarity proposed by the graph. 
        more » 
        « less   
        
    
                            - Award ID(s):
- 2213568
- PAR ID:
- 10593929
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Methods in Ecology and Evolution
- Volume:
- 16
- Issue:
- 6
- ISSN:
- 2041-210X
- Format(s):
- Medium: X Size: p. 1255-1272
- Size(s):
- p. 1255-1272
- Sponsoring Org:
- National Science Foundation
More Like this
- 
            
- 
            Abstract Estimating and monitoring plant population size is fundamental for ecological research, as well as conservation and restoration programs. High‐resolution imagery has potential to facilitate such estimation and monitoring. However, remotely sensed estimates typically have higher uncertainty than field measurements, risking biased inference on population status.We present a model that accounts for false negative (missed plants) and false positive (misclassified or double‐counted plants) error in counts from high‐resolution imagery via integration with ground data. We apply it to estimate the abundance of a foundational shrub species in post‐wildfire landscapes in the western United States. In these landscapes, plant recruitment is crucial for ecological recovery but locally patchy, motivating the use of spatially extensive measurements from unoccupied aerial systems (UAS). Integrating >16 ha of UAS imagery with >700 georeferenced field plots, we fit our model to generate insights into the prevalence and drivers of observation errors associated with classification algorithms used to distinguish individual plants, relationships between abundance and landscape context, and to generate spatially explicit maps of shrub abundance.Raw counts of plant abundance in high‐resolution imagery resulted in substantial false negative and false positive observation errors. The probability of detecting (p) adult plants (0.25 m tall) varied between sites within 0.52 < < 0.82, whereas the detection of smaller plants (<0.25 m) was lower, 0.03 < < 0.3. On average, we estimate that 19% of all detected plants were false positive errors, which varied spatially in relation to topographic predictors. Abundance declined toward the interior of previous wildfires and was positively associated with terrain roughness.Our study demonstrates that integrated models accounting for imperfect detection improve estimates of plant population abundance derived from inherently imperfect UAS imagery. We believe such models will further improve inference on plant population dynamics—relevant to restoration, wildlife habitat and related objectives—and echo previous calls for remote sensing applications to better differentiate between ecological and observational processes.more » « less
- 
            Abstract Structural diversity—the volume and physical arrangement of vegetation within the three‐dimensional (3D) space of ecosystems—is a predictor of ecosystem function that can be measured at large scales with remote sensing. However, the landscape composition and configuration of structural diversity across macrosystems have not been well described. Using a relatively recently developed method to quantify landscape composition and configuration of continuous habitat or terrain, we propose the application of gradient surface metrics (GSMs) to quantify landscape patterns of structural diversity and provide insights into how its spatial pattern relates to ecosystem function. We first applied an example set of GSMs that represent landscape heterogeneity, dominance, and edge density to Lidar‐derived structural diversity within 28 forested landscapes at National Ecological Observatory Network (NEON) sites. Second, we tested for forest type, geographic location, and climate drivers of macroscale variation in GSMs of structural diversity (GSM‐SD). Third, we demonstrated the utility of these metrics for understanding spatial patterns of ecosystem function in a case study with NDVI, a proxy of productivity. We found that GSM‐SD varied in landscapes within macrosystems, with forest type, geographic location, and climate being significantly related to some but not all metrics. We also found that dominance of high peaks of height and vertical complexity of canopy vegetation and the heterogeneity of the vertical complexity and coefficient of variation of canopy vegetation height within 120‐m patches were negatively correlated with NDVI across the 28 NEON sites. However, forest type always had a significant interaction term between these GSM‐SD and NDVI relationships. Our study demonstrates that GSMs are useful to describe the landscape composition and configuration of structural diversity and its relationship with productivity that warrants further consideration for spatially motivated management decisions.more » « less
- 
            Abstract The structure of local ecological communities is thought to be determined by a series of hierarchical abiotic and biotic filters which select for or against species based on their traits. Many human impacts, like fragmentation, serve to alter environmental conditions across a range of spatial scales and may impact trait–environment interactions.We examined the effects of environmental variation associated with habitat fragmentation of seagrass habitat measured from microhabitat to landscape scales in controlling the taxonomic and trait‐based community structure of benthic fauna.We measured patterns in species abundance and biomass of seagrass epifauna and infauna sampled using sediment cores from 86 sites (across 21 meadows) in Back Sound, North Carolina, USA. We related local faunal community structure to environmental variation measured at three spatial scales (microhabitat, patch and landscape). Additionally, we tested the value of species traits in predicting species‐specific responses to habitat fragmentation across scales.While univariate measures of faunal communities (i.e. total density, biomass and species richness) were positively related to microhabitat‐scale seagrass biomass only, overall community structure was predicted by environmental variation at the microhabitat, patch (i.e. patch size) and landscape (i.e. number of patches, landscape seagrass area) scales. Furthermore, fourth‐corner analysis revealed that species traits explained as much variation in organismal densities as species identity. For example, species with planktonic‐dispersing larvae and deposit‐feeding trophic modes were more abundant in contiguous, high seagrass cover landscapes while suspension feeders favoured more fragmented landscapes.We present quantitative evidence supporting hierarchal models of community assembly which predict that interactions between species traits and environmental variation across scales ultimately drive local community composition. Variable responses of individual traits to multiple environmental variables suggest that community assembly processes that act on species via traits related to dispersal, mobility and trophic mode will be altered under habitat fragmentation. Additionally, with increasing global temperatures, the tropical seagrassHalodule wrightiiis predicted to replace the temperateZostera marinaas the dominate seagrass in our study region, therefore potentially favouring species with planktonic‐dispersing larva and weakening the strength of environmental control on community assembly.more » « less
- 
            Frontier forests in the Brazilian Amazon have been heavily altered by nearly a half-century of deforestation for agriculture and degradation from fire and logging. The long-term effects of forest degradation on habitat structure and habitat use remain poorly understood, largely due to the limitations of traditional field methods for characterizing heterogeneity at relevant spatial and temporal scales. This work demonstrates the opportunity to assess degradation impacts on ecosystem structure and biodiversity at landscape scales (200 km2) by combining airborne lidar and acoustic remote sensing across two municipalities in Mato Grosso, Feliz Natal and Nova Ubiratã. Among degradation classes, our results indicate that repeated fire events have the most destructive legacy for both habitat structure and habitat use. Lidar analyses reveal that repeated fire events can result in a total loss of original canopy trees. Similarly, our acoustic analyses suggest that repeated fires may fundamentally transform animal community composition. The combination of remote sensing approaches bridges the scale gap between ground-based and satellite observations to support a regional-scale investigation into the complex consequences of Amazon forest degradation.more » « less
 An official website of the United States government
An official website of the United States government 
				
			 
					 
					
