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1. A pangenome analysis reveals the center of origin and evolutionary history of Phytophthora infestans and 1c clade species

   https://doi.org/10.1371/journal.pone.0314509  

   Coomber, Allison L; Saville, Amanda C; Carbone, Ignazio; Martin, Michael; Bieker, Vanessa C; Ristaino, Jean Beagle (January 2025, PLOS ONE)

   Blair, Jaime E (Ed.)

   We examined the evolutionary history ofPhytophthora infestansand its close relatives in the 1c clade. We used whole genome sequence data from 69 isolates ofPhytophthoraspecies in the 1c clade and conducted a range of genomic analyses including nucleotide diversity evaluation, maximum likelihood trees, network assessment, time to most recent common ancestor and migration analysis. We consistently identified distinct and later divergence of the two MexicanPhytophthoraspecies,P.mirabilisandP.ipomoeae, fromP.infestansand other 1c clade species.Phytophthora infestansexhibited more recent divergence from other 1c clade species ofPhytophthorafrom South America,P.andinaandP.betacei. Speciation in the 1c clade and evolution ofP.infestansoccurred in the Andes.P.andina–P.betacei–P.infestansformed a species complex with indistinct species boundaries, hybridizations between the species, and short times to common ancestry. Furthermore, the distinction between modern Mexican and South AmericanP.infestansproved less discrete, suggesting gene flow between populations over time. Admixture analysis indicated a complex relationship among these populations, hinting at potential gene flow across these regions. HistoricP.infestans, collected from 1845–1889, were the first to diverge from all otherP.infestanspopulations. Modern South American populations diverged next followed by Mexican populations which showed later ancestry. Both populations were derived from historicP.infestans. Based on the time of divergence ofP.infestansfrom its closest relatives,P.andinaandP.betaceiin the Andean region, we consider the Andes to be the center of origin ofP.infestans, with modern globalization contributing to admixture betweenP.infestanspopulations today from Mexico, the Andes and Europe. 

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2. Bounding p-Brauer characters in finite groups with two conjugacy classes of p-elements

   https://doi.org/10.1007/s11856-024-2613-1  

   Hung, Nguyen Ngoc; Sambale, Benjamin; Tiep, Pham Huu (September 2024, Israel Journal of Mathematics)

   Abstract Letk(B₀) andl(B₀) respectively denote the number of ordinary andp-Brauer irreducible characters in the principal blockB₀of a finite groupG. We prove that, ifk(B₀)−l(B₀) = 1, thenl(B₀) ≥p− 1 or elsep= 11 andl(B₀) = 9. This follows from a more general result that for every finite groupGin which all non-trivialp-elements are conjugate,l(B₀) ≥p− 1 or elsep= 11 and$$G/{{\bf{O}}_{{p^\prime }}}(G) \cong C_{11}^2\, \rtimes\,{\rm{SL}}(2,5)$$ $G/O_{p^{\prime }}\left(G\right)\cong C_{11}^2⋊\text{SL}(2,5)$. These results are useful in the study of principal blocks with few characters. We propose that, in every finite groupGof order divisible byp, the number of irreducible Brauer characters in the principalp-block ofGis always at least$$2\sqrt {p - 1} + 1 - {k_p}(G)$$ $2\sqrt{p-1}+1-k_p\left(G\right)$, wherek_p(G) is the number of conjugacy classes ofp-elements ofG. This indeed is a consequence of the celebrated Alperin weight conjecture and known results on bounding the number ofp-regular classes in finite groups. 

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3. Enhancing Tsunami Warning Using P Wave Coda

   https://doi.org/10.1029/2019JB018221  

   Lay, Thorne; Liu, Chengli; Kanamori, Hiroo (October 2019, Journal of Geophysical Research: Solid Earth)

   Abstract Most large tsunamis are generated by earthquakes on offshore plate boundary megathrusts. The primary factors influencing tsunami excitation are the seismic moment, faulting geometry, and depth of the faulting. Efforts to provide rapid tsunami warning have emphasized seismic and geodetic methods for quickly determining the event size and faulting geometry. It remains difficult to evaluate the updip extent of rupture, which has significant impact on tsunami excitation. TeleseismicPwaves can constrain this issue; slip under deep water generates strongpwPwater reverberations that persist as ringingP_codaafter the directPphases from the faulting have arrived. Event‐averagedP_coda/Pamplitude measures at large epicentral distances (>80°), tuned to the dominant periods of deep waterpwP(~12–15 s), correlate well with independent models of whether slip extends to near the trench or not. Data at closer ranges (30° to 80°) reduce the time lag needed for inferring the updip extent of rupture to <15 min. Arrival ofPPandPPPphases contaminates closer distanceP_codameasures, but this can be suppressed by azimuthal or distance binning of the measures. Narrowband spectral ratio measures and differential magnitude measures ofP_codaand directP(m_B) perform comparably to broader band root‐mean‐square (RMS) measures.P_coda/Plevels for large nonmegathrust events are also documented. Rapid measurement ofP_coda/Pmetrics after a large earthquake can supplement quick moment tensor determinations to enhance tsunami warnings; observation of largeP_codalevels indicates that shallow submarine rupture occurred and larger than typical tsunami (for givenM_W) can be expected. 

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4. The γ -process nucleosynthesis in core-collapse supernovae: II. Effect of the explosive recipe

   https://doi.org/10.1051/0004-6361/202449994  

   Roberti, L; Pignatari, M; Fryer, C; Lugaro, M (June 2024, Astronomy & Astrophysics)

   Context.Theγprocess in core-collapse supernovae (CCSNe) can produce a number of neutron-deficient stable isotopes heavier than iron (pnuclei). However, current model predictions do not fully reproduce solar abundances, especially for^92, 94Mo and^96, 98Ru. Aims.We investigate the impact of different explosion energies and parametrizations on the nucleosynthesis ofpnuclei, by studying stellar models with different initial masses and different CCSN explosions. Methods.We compared thep-nucleus yields obtained using a semi-analytical method to simulate the supernova to those obtained using hydrodynamic models. We explored the effect of varying the explosion parameters on thep-nucleus production in two sets of CCSN models with initial masses of 15, 20, and 25M_⊙at solar metallicity. We calculated a new set of 24 CCSN models (eight for each stellar progenitor mass) and compared our results with another recently published set of 80 CCSN models that includes a wide range of explosion parameters: explosion energy or initial shock velocity, energy injection time, and mass location of the injection. Results.We find that the totalp-nucleus yields are only marginally affected by the CCSN explosion prescriptions if theγ-process production is already efficient in the stellar progenitors due to a C−O shell merger. In most CCSN explosions from progenitors without a C−O shell merger, theγ-process yields increase with the explosion energy by up to an order of magnitude, depending on the progenitor structure and the CCSN prescriptions. The general trend of thep-nucleus production with the explosion energy is more complicated if we look at the production of singlepnuclei. The lightp-nuclei tend to be the most enhanced with increasing explosion energy. In particular, for the CCSN models where theα-rich freeze-out component is ejected, the yields of the lightestpnuclei (including^92, 94Mo and⁹⁶Ru) increase by up to three orders of magnitude. Conclusions.We provide the first extensive study using different sets of massive stars of the impact of varying CCSN explosion prescriptions on the production ofpnuclei. Unlike previous expectations and recent results in the literature, we find that the average production ofpnuclei tends to increase with the explosion energy. We also confirm that the pre-explosion production ofpnuclei in C−O shell mergers is a robust result, independent of the subsequent explosive nucleosynthesis. More generally, a realistic range of variations in the evolution of stellar progenitors and in the CCSN explosions might boost the CCSN contribution to the galactic chemical evolution ofpnuclei. 

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5. Paludicola gen. nov. and Revision of the Species Formerly in Batrachospermum Section  Turfosa (Batrachospermales, Rhodophyta)

   https://doi.org/10.1111/jpy.13001  

   Vis, Morgan L.; Lee, Janina; Eloranta, Pertti; Chapuis, Iara S.; Lam, Daryl W.; Necchi, Jr., Orlando; Oliveira, ed., M. C. (May 2020, Journal of Phycology)

   Since the first phylogenetic study of the order Batrachospermales,Batrachospermumwas shown to be paraphyletic. Subsequently, sections of the genus have been methodically investigated usingDNAsequences and morphology in order to propose new genera and delineate species.BatrachospermumsectionTurfosais the last section with multiple species yet to be examined. New sequence data of specimens from Europe and the United States were combined with the sparse sequence data already available. Phylogenetic analyses usingrbcL andCOI‐5P sequences showed this section to be a well‐supported clade, distinct fromBatrachospermumsectionBatrachospermumand its segregate genera. Section Turfosais raised to the generic rank asPaludicolagen. nov. Substantial genetic variation within the genus was discovered and 12 species are recognized based onDNAsequence data as well as morphological characters and geographic distribution. The following morphological characters were applied to distinguish species: branching pattern (pseudodichotomous or irregular), whorl size (reduced or well developed), primary fascicles (curved or straight), spermatangia origin (primary or secondary fascicles), and carposporophyte arrangement (loose or dense). Previously published species were transferred to the new genus:P. turfosa,P. keratophyta,P. orthosticha,P. phangiae,andP. periploca. Seven new species are proposed as follows:P. groenbladiifrom Europe;P. communis,P. johnhallii, andP. leafensisfrom North America; andP. aquanigra,P. diamantinensis, andP. turfosiformisfrom Brazil. In addition, three unsequenced species in the section,P. bakarensis,P. gombakensis, andP. tapirensis, were transferred to the new genus. 

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