The NASA-NSF sponsored Space Weather with Quantified Uncertainty (SWQU) project's main objective is to develop a data-driven, time-dependent, open source model of the solar corona and heliosphere. One key component of the SWQU effort is using a data-assimilation flux transport model to generate an ensemble of synchronic radial magnetic field maps as boundary conditions for the coronal field model. To accomplish this goal, we are developing a new Open-source Flux Transport (OFT) software suite. While there are a number of established flux transport models in the community, OFT is distinguished from many of these efforts in 3 key attributes: (1) It is based on modern computing techniques that will allow many realizations to be rapidly computed on multi-core systems and/or GPUs, (2) it is designed to be easily extensible, and (3) OFT will be released as an open source project. OFT consists of three software packages: 1) OFTpy: a python package for data acquisition, database organization, and Carrington map processing, 2) ConFlow: a Fortran code that generates super granular convective flows, and 3) High-Performance Flux Transport (HipFT): a modular, GPU-accelerated Fortran code for modeling surface flux transport with data assimilation. Here, we present the current state of the OFT project, key features and methods of OFTpy, ConFlow, and HipFt, and real-world examples of data-assimilation and flux transport with HipFT. Validation and performance tests are shown, including generating an ensemble of OFT maps.
more »
« less
This content will become publicly available on May 1, 2026
Open-source Flux Transport (OFT). I. HipFT–High-performance Flux Transport
Abstract Global solar photospheric magnetic maps play a critical role in solar and heliospheric physics research. Routine magnetograph measurements of the field occur only along the Sun–Earth line, leaving the far side of the Sun unobserved. Surface flux transport (SFT) models attempt to mitigate this by modeling the surface evolution of the field. While such models have long been established in the community (with several releasing public full-Sun maps), none are open source. The Open-source Flux Transport (OFT) model seeks to fill this gap by providing an open and user-extensible SFT model that also builds on the knowledge of previous models with updated numerical and data acquisition/assimilation methods along with additional user-defined features. In this first of a series of papers on OFT, we introduce its computational core: the High-performance Flux Transport (HipFT) code (https://github.com/predsci/hipft). HipFT implements advection, diffusion, and data assimilation in a modular design that supports a variety of flow models and options. It can compute multiple realizations in a single run across model parameters to create ensembles of maps for uncertainty quantification and is high-performance through the use of multi-CPU and multi-GPU parallelism. HipFT is designed to enable users to write extensions easily, enhancing its flexibility and adaptability. We describe HipFT’s model features, validations of its numerical methods, performance of its parallel and GPU-accelerated code implementation, analysis/postprocessing options, and example use cases.
more »
« less
- PAR ID:
- 10599037
- Publisher / Repository:
- IOP
- Date Published:
- Journal Name:
- The Astrophysical Journal Supplement Series
- Volume:
- 278
- Issue:
- 1
- ISSN:
- 0067-0049
- Page Range / eLocation ID:
- 24
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Protein language models, like the popular ESM2, are widely used tools for extracting evolution-based protein representations and have achieved significant success on downstream biological tasks. Representations based on sequence and structure models, however, show significant performance differences depending on the downstream task. A major open problem is to obtain representations that best capture both the evolutionary and structural properties of proteins in general. Here we introduceImplicitStructureModel(ISM), a sequence-only input model with structurally-enriched representations that outperforms state-of-the-art sequence models on several well-studied benchmarks including mutation stability assessment and structure prediction. Our key innovations are a microenvironment-based autoencoder for generating structure tokens and a self-supervised training objective that distills these tokens into ESM2’s pre-trained model. We have madeISM’s structure-enriched weights easily available: integrating ISM into any application using ESM2 requires changing only a single line of code. Our code is available athttps://github.com/jozhang97/ISM.more » « less
-
Rapid advancement in machine learning is increasing the demand for effective graph data analysis. However, real-world graph data often exhibits class imbalance, leading to poor performance of standard machine learning models on underrepresented classes. To address this,Class-ImbalancedLearning onGraphs (CILG) has emerged as a promising solution that combines graph representation learning and class-imbalanced learning. This survey provides a comprehensive understanding of CILG’s current state-of-the-art, establishing the first systematic taxonomy of existing work and its connections to traditional imbalanced learning. We critically analyze recent advances and discuss key open problems. A continuously updated reading list of relevant articles and code implementations is available athttps://github.com/yihongma/CILG-Papers.more » « less
-
Abstract Database peptide search is the primary computational technique for identifying peptides from the mass spectrometry (MS) data. Graphical Processing Units (GPU) computing is now ubiquitous in the current-generation of high-performance computing (HPC) systems, yet its application in the database peptide search domain remains limited. Part of the reason is the use of sub-optimal algorithms in the existing GPU-accelerated methods resulting in significantly inefficient hardware utilization. In this paper, we design and implement a new-age CPU-GPU HPC framework, calledGiCOPS, for efficient and complete GPU-acceleration of the modern database peptide search algorithms on supercomputers. Our experimentation shows that the GiCOPS exhibits between 1.2 to 5$$\times$$ speed improvement over its CPU-only predecessor, HiCOPS, and over 10$$\times$$ improvement over several existing GPU-based database search algorithms for sufficiently large experiment sizes. We further assess and optimize the performance of our framework using the Roofline Model and report near-optimal results for several metrics including computations per second, occupancy rate, memory workload, branch efficiency and shared memory performance. Finally, the CPU-GPU methods and optimizations proposed in our work for complex integer- and memory-bounded algorithmic pipelines can also be extended to accelerate the existing and future peptide identification algorithms. GiCOPS is now integrated with our umbrella HPC framework HiCOPS and is available at:https://github.com/pcdslab/gicops.more » « less
-
Abstract We introduce a new framework called Machine Learning (ML) based Auroral Ionospheric electrodynamics Model (ML‐AIM). ML‐AIM solves a current continuity equation by utilizing the ML model of Field Aligned Currents of Kunduri et al. (2020,https://doi.org/10.1029/2020JA027908), the FAC‐derived auroral conductance model of Robinson et al. (2020,https://doi.org/10.1029/2020JA028008), and the solar irradiance conductance model of Moen and Brekke (1993,https://doi.org/10.1029/92gl02109). The ML‐AIM inputs are 60‐min time histories of solar wind plasma, interplanetary magnetic fields (IMF), and geomagnetic indices, and its outputs are ionospheric electric potential, electric fields, Pedersen/Hall currents, and Joule Heating. We conduct two ML‐AIM simulations for a weak geomagnetic activity interval on 14 May 2013 and a geomagnetic storm on 7–8 September 2017. ML‐AIM produces physically accurate ionospheric potential patterns such as the two‐cell convection pattern and the enhancement of electric potentials during active times. The cross polar cap potentials (ΦPC) from ML‐AIM, the Weimer (2005,https://doi.org/10.1029/2004ja010884) model, and the Super Dual Auroral Radar Network (SuperDARN) data‐assimilated potentials, are compared to the ones from 3204 polar crossings of the Defense Meteorological Satellite Program F17 satellite, showing better performance of ML‐AIM than others. ML‐AIM is unique and innovative because it predicts ionospheric responses to the time‐varying solar wind and geomagnetic conditions, while the other traditional empirical models like Weimer (2005,https://doi.org/10.1029/2004ja010884) designed to provide a quasi‐static ionospheric condition under quasi‐steady solar wind/IMF conditions. Plans are underway to improve ML‐AIM performance by including a fully ML network of models of aurora precipitation and ionospheric conductance, targeting its characterization of geomagnetically active times.more » « less
An official website of the United States government
