skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: A Reverse Nonequilibrium Molecular Dynamics Algorithm for Coupled Mass and Heat Transport in Mixtures
We present a new method for introducing stable non-equilibrium concentration gradients in molecular dynamics simulations of mixtures. This method extends earlier Reverse Non-Equilibrium Molecular Dynamics (RNEMD) methods which use kinetic energy scaling moves to create temperature or velocity gradients. In the new scaled particle flux (SPF-RNEMD) algorithm, energies and forces are computed simultaneously for a molecule existing in two non-adjacent regions of a simulation box, and the system evolves under a linear combination of these interactions. A continuously increasing particle scaling variable is responsible for migration of the molecule between the regions as the simulation progresses, allowing for simulations under an applied particle flux. To test the method, we investigate diffusivity in mixtures of identical, but distinguishable particles, and in a simple mixture of multiple Lennard-Jones particles. The resulting concentration gradients provide Fick diffusion constants for mixtures. We also discuss using the new method to obtain coupled transport properties using simultaneous particle \textit{and} thermal fluxes to compute the temperature dependence of the diffusion coefficient and activation energies for diffusion from a single simulation. Lastly, we demonstrate the use of this new method in interfacial systems by computing the diffusive permeability for a molecular fluid moving through a nanoporous graphene membrane.  more » « less
Award ID(s):
1954648
PAR ID:
10613501
Author(s) / Creator(s):
;
Publisher / Repository:
American Chemical Society
Date Published:
Journal Name:
Journal of Chemical Theory and Computation
Volume:
20
Issue:
12
ISSN:
1549-9618
Page Range / eLocation ID:
4986 to 4997
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Aguirre, M.A.; Luding, S.; Pugnaloni, L.A.; Soto, R. (Ed.)
    In dense flowing bidisperse particle mixtures varying in size or density alone, large particles rise (driven by percolation) and heavy particles sink (driven by buoyancy). When the two particle species differ from each other in both size and density, the two segregation mechanisms either enhance (large/light and small/heavy) or oppose (large/heavy and small/light) each other. In the latter case, an equilibrium condition exists in which the two mechanisms balance and the particles no longer segregate. This leads to a methodology to design non-segregating particle mixtures by specifying particle size ratio, density ratio, and mixture concentration to achieve the equilibrium condition. Using DEM simulations of quasi-2D bounded heap flow, we show that segregation is significantly reduced for particle mixtures near the equilibrium condition. In addition, the rise-sink transition for a range of particle size and density ratios matches the predictions of the combined size and density segregation model. 
    more » « less
  2. null (Ed.)
    Flowing granular materials segregate due to differences in particle size (driven by percolation) and density (driven by buoyancy). Modelling the segregation of mixtures of large/heavy particles and small/light particles is challenging due to the opposing effects of the two segregation mechanisms. Using discrete element method (DEM) simulations of combined size and density segregation we show that the segregation velocity is well described by a model that depends linearly on the local shear rate and quadratically on the species concentration for free surface flows. Concentration profiles predicted by incorporating this segregation velocity model into a continuum advection–diffusion–segregation transport model match DEM simulation results well for a wide range of particle size and density ratios. Most surprisingly, the DEM simulations and the segregation velocity model both show that the segregation direction for a range of size and density ratios depends on the local species concentration. This leads to a methodology to determine the combination of particle size ratio, density ratio and particle concentration for which a bidisperse mixture will not segregate. 
    more » « less
  3. Abstract In dense flowing bidisperse particle mixtures varying in size or density alone, smaller particles sink (percolation‐driven) and lighter particles rise (buoyancy‐driven). But when particle species differ from each other in both size and density, percolation and buoyancy can either enhance (large/light and small/heavy) or oppose (large/heavy and small/light) each other. In the latter case, a local equilibrium can exist in which the two mechanisms balance and particles remain mixed: this allows the design of minimally segregating mixtures by specifying particle size ratio, density ratio, and mixture concentration. Using DEM simulations, we show that mixtures specified by the design methodology remain relatively well‐mixed in heap and tumbler flows. Furthermore, minimally segregating mixtures prepared in a fully segregated state in a tumbler mix over time and eventually reach a nearly uniform concentration. Tumbler experiments with large steel and small glass particles validate the DEM simulations and the potential for designing minimally segregating mixtures. 
    more » « less
  4. The cytoskeleton–a composite network of biopolymers, molecular motors, and associated binding proteins–is a paradigmatic example of active matter. Particle transport through the cytoskeleton can range from anomalous and heterogeneous subdiffusion to superdiffusion and advection. Yet, recapitulating and understanding these properties–ubiquitous to the cytoskeleton and other out-of-equilibrium soft matter systems–remains challenging. Here, we combine light sheet microscopy with differential dynamic microscopy and single-particle tracking to elucidate anomalous and advective transport in actomyosin-microtubule composites. We show that particles exhibit multi-mode transport that transitions from pronounced subdiffusion to superdiffusion at tunable crossover timescales. Surprisingly, while higher actomyosin content increases the range of timescales over which transport is superdiffusive, it also markedly increases the degree of subdiffusion at short timescales and generally slows transport. Corresponding displacement distributions display unique combinations of non-Gaussianity, asymmetry, and non-zero modes, indicative of directed advection coupled with caged diffusion and hopping. At larger spatiotemporal scales, particles in active composites exhibit superdiffusive dynamics with scaling exponents that are robust to changing actomyosin fractions, in contrast to normal, yet faster, diffusion in networks without actomyosin. Our specific results shed important new light on the interplay between non-equilibrium processes, crowding and heterogeneity in active cytoskeletal systems. More generally, our approach is broadly applicable to active matter systems to elucidate transport and dynamics across scales. 
    more » « less
  5. Particle shape strongly influences the diffusion charging of aerosol particles exposed to bipolar/unipolar ions and accurate modeling is needed to predict the charge distribution of non-spherical particles. A prior particle-ion collision kernel β_i model including Coulombic and image potential interactions for spherical particles is generalized for arbitrary shapes following a scaling approach that uses a continuum and free molecular particle length scale and Langevin dynamics simulations of non-spherical particle-ion collisions for attractive Coulomb-image potential interactions. This extended β_i model for collisions between unlike charged particle-ion (bipolar charging) and like charged particle-ion (unipolar charging) is validated by comparing against published experimental data of bipolar charge distributions for diverse shapes. Comparison to the bipolar charging data for spherical particles shows good agreement in air, argon, and nitrogen, while also demonstrating high accuracy in predicting charge states up to ±6. Comparisons to the data for fractal aggregates reveal that the LD-based β_i model predicts within overall ±30% without any systematic bias. The mean charge on linear chain aggregates and charge fractions on cylindrical particles is found to be in good agreement with the measurements (~±20% overall). The comparison with experimental results supports the use of LD-based diffusion charging models to predict the bipolar and unipolar charge distribution of arbitrary shaped aerosol particles for a wide range of particle size, and gas temperature, pressure. The presented β_i model is valid for perfectly conducting particles and in the absence of external electric fields; these simplifications need to be addressed in future work on particle charging. 
    more » « less