skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


This content will become publicly available on June 11, 2026

Title: Plant Individuality: A Physiological Approach
While plants provide some of the most interesting cases for individuality-related problems in philosophy of biology (e.g., Clarke 2012; Gerber 2018), no work has examined plant individuality through specifically focusing on physiological processes, a lacuna this paper aims to fill. We think that different domains of biology suggest different approaches, and our specific focus on physiological processes, such as plant hormone systems and source-sink balance regulations, will help to identify coordinated systems at different scales. Identifying physiological individuals is crucial for a wide range of research in plant biology, including research on plant nutrition, transport and accumulation of nutrients in edible parts, and plant responses to various stress conditions such as plant diseases and changing abiotic conditions. Although plants do produce systemic responses to local stimuli (e.g., a sudden wound on one leaf can result in a whole-plant response), considering them as individuals is (often) problematic. They are highly modular organisms, and they can grow vegetatively, constituting clones of what seem, superficially, to be individual organisms. Moreover, as with animals, there are problems raised by their symbiotic relations to micro-organisms, most notably the mycorrhiza, through which they may be connected to other plants. We argue that coordinated plant systems can be distinguished at multiple scales from a physiological perspective. While none of these is a unit that must be necessarily called “the individual,” they offer integrated approaches for various research problems in plant science.  more » « less
Award ID(s):
2240749
PAR ID:
10632680
Author(s) / Creator(s):
;
Publisher / Repository:
Philosophy, Theory, and Practice in Biology
Date Published:
Journal Name:
Philosophy, Theory, and Practice in Biology
Edition / Version:
https://doi.org/10.3998/ptpbio.5261
Volume:
17
Issue:
1
ISSN:
2475-3025
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Since the Industrial Revolution began approximately 200 years ago, global atmospheric carbon dioxide concentration ([CO2]) has increased from 270 to 401 µL L−1, and average global temperatures have risen by 0.85°C, with the most pronounced effects occurring near the poles (IPCC, 2013). In addition, the last 30 years were the warmest decades in 1,400 years (PAGES 2k Consortium, 2013). By the end of this century, [CO2] is expected to reach at least 700 µL L−1, and global temperatures are projected to rise by 4°C or more based on greenhouse gas scenarios (IPCC, 2013). Precipitation regimes also are expected to shift on a regional scale as the hydrologic cycle intensifies, resulting in greater extremes in dry versus wet conditions (Medvigy and Beaulieu, 2012). Such changes already are having profound impacts on the physiological functioning of plants that scale up to influence interactions between plants and other organisms and ecosystems as a whole (Fig. 1). Shifts in climate also may alter selective pressures on plants and, therefore, have the potential to influence evolutionary processes. In some cases, evolutionary responses can occur as rapidly as only a few generations (Ward et al., 2000; Franks et al., 2007; Lau and Lennon, 2012), but there is still much to learn in this area, as pointed out by Franks et al. (2014). Such responses have the potential to alter ecological processes, including species interactions, via ecoevolutionary feedbacks (Shefferson and Salguero-Gómez, 2015). In this review, we discuss microevolutionary and macroevolutionary processes that can shape plant responses to climate change as well as direct physiological responses to climate change during the recent geologic past as recorded in the fossil record. We also present work that documents how plant physiological and evolutionary responses influence interactions with other organisms as an example of how climate change effects on plants can scale to influence higher order processes within ecosystems. Thus, this review combines findings in plant physiological ecology and evolutionary biology for a comprehensive view of plant responses to climate change, both past and present. 
    more » « less
  2. Orphan Genes (OGs) are a mysterious class of genes that have recently gained significant attention. Despite lacking a clear evolutionary history, they are found in nearly all living organisms, from bacteria to humans, and they play important roles in diverse biological processes. The discovery of OGs was first made through comparative genomics followed by the identification of unique genes across different species. OGs tend to be more prevalent in species with larger genomes, such as plants and animals, and their evolutionary origins remain unclear but potentially arise from gene duplication, horizontal gene transfer (HGT), or de novo origination. Although their precise function is not well understood, OGs have been implicated in crucial biological processes such as development, metabolism, and stress responses. To better understand their significance, researchers are using a variety of approaches, including transcriptomics, functional genomics, and molecular biology. This review offers a comprehensive overview of the current knowledge of OGs in all domains of life, highlighting the possible role of dark transcriptomics in their evolution. More research is needed to fully comprehend the role of OGs in biology and their impact on various biological processes. 
    more » « less
  3. SUMMARY As sessile organisms, plants are finely tuned to respond dynamically to developmental, circadian and environmental cues. Genome‐wide studies investigating these types of cues have uncovered the intrinsically different ways they can impact gene expression over time. Recent advances in single‐cell sequencing and time‐based bioinformatic algorithms are now beginning to reveal the dynamics of these time‐based responses within individual cells and plant tissues. Here, we review what these techniques have revealed about the spatiotemporal nature of gene regulation, paying particular attention to the three distinct ways in which plant tissues are time sensitive. (i) First, we discuss how studying plant cell identity can reveal developmental trajectories hidden in pseudotime. (ii) Next, we present evidence that indicates that plant cell types keep their own local time through tissue‐specific regulation of the circadian clock. (iii) Finally, we review what determines the speed of environmental signaling responses, and how they can be contingent on developmental and circadian time. By these means, this review sheds light on how these different scales of time‐based responses can act with tissue and cell‐type specificity to elicit changes in whole plant systems. 
    more » « less
  4. Facing stress and producing stress responses are crucial aspects of an organism’s life and the evolution of both its species and of the other species in its environment, which are co-evolving with it. Philosophers and biologists emphasize the importance of environmental complexity and how organisms deal with it in evolution of cognitive processes. This article adds to these discussions by highlighting the importance of stress physiology in processes connected to plant cognition. While this article supports the thesis that life means cognizing (i.e., sensing the environment, arranging internal processes according to that perception, and affecting the environment with its actions), it also emphasizes that there are various kinds of organisms. In this regard, plant cognition is not animal cognition. However, given both the variety and continuity in evolutionary processes and the similarities even between the distantly related organisms in the tree of life, I argue that it is usually useful to consider and compare physiological and molecular mechanisms in plants and animals as well as the concepts and research processes in animal and plant science. Although the “pathological complexity” thesis that Veit (2023) presents is fruitful in considering the evolution of consciousness and cognition, I argue that, when thinking of biological processes in relation to cognition, stress can be a helpful concept (maybe even as suitable as pathological complexity) in thinking of organisms’ responses to environmental complexity and their adaptation and acclimation processes. 
    more » « less
  5. Abstract The rich diversity of angiosperms, both the planet's dominant flora and the cornerstone of agriculture, is integrally intertwined with a distinctive evolutionary history. Here, we explore the interplay between angiosperm genome organization and botanical diversity, empowered by genomic approaches ranging from genetic linkage mapping to analysis of gene regulation. Commonality in the genetic hardware of plants has enabled robust comparative genomics that has provided a broad picture of angiosperm evolution and implicated both general processes and specific elements in contributing to botanical diversity. We argue that the hardware of plant genomes—both in content and in dynamics—has been shaped by selection for rather substantial differences in gene regulation between plants and animals such as maize and human, organisms of comparable genome size and gene number. Their distinctive genome content and dynamics may reflect in part the indeterminate development of plants that puts strikingly different demands on gene regulation than in animals. Repeated polyploidization of plant genomes and multiplication of individual genes together with extensive rearrangement and differential retention provide rich raw material for selection of morphological and/or physiological variations conferring fitness in specific niches, whether natural or artificial. These findings exemplify the burgeoning information available to employ in increasing knowledge of plant biology and in modifying selected plants to better meet human needs. 
    more » « less