An official website of the United States government
Transformer-based language models have shown promise in genomics but face challenges unique to DNA, such as sequence lengths spanning hundreds of millions of base pairs and subtle long-range dependencies. Although next-token prediction remains the predominant pre-training objective (inherited from NLP), recent research suggests that multi-objective frameworks can better capture complex structure. In this work, we explore whether the Birdie framework, a reinforcement learning-based, mixture-of-objectives pre-training strategy, can similarly benefit genomic foundation models. We compare a slightly modified Birdie approach with a purely autoregressive, next token prediction baseline on standard Nucleotide Transformer benchmarks. Our results show performance gains in the DNA domain, indicating that mixture-of-objectives training could be a promising alternative to next token prediction only pre-training for genomic sequence modeling.
more »
« less
Diffusion Forcing: Next-token Prediction Meets Full-Sequence Diffusion
This paper presents Diffusion Forcing, a new training paradigm where a diffusion model is trained to denoise a set of tokens with independent per-token noise levels. We apply Diffusion Forcing to sequence generative modeling by training a causal next-token prediction model to generate one or several future tokens without fully diffusing past ones. Our approach is shown to combine the strengths of next-token prediction models, such as variable-length generation, with the strengths of full-sequence diffusion models, such as the ability to guide sampling to desirable trajectories. Our method offers a range of additional capabilities, such as (1) rolling-out sequences of continuous tokens, such as video, with lengths past the training horizon, where baselines diverge and (2) new sampling and guiding schemes that uniquely profit from Diffusion Forcing's variable-horizon and causal architecture, and which lead to marked performance gains in decision-making and planning tasks. In addition to its empirical success, our method is proven to optimize a variational lower bound on the likelihoods of all subsequences of tokens drawn from the true joint distribution.
more »
« less
- Award ID(s):
- 2211260
- PAR ID:
- 10635301
- Publisher / Repository:
- Neural Information Processing Systems 2024
- Date Published:
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Diffusion models are powerful, but they require a lot of time and data to train. We propose Patch Diffusion, a generic patch-wise training framework, to significantly reduce the training time costs while improving data efficiency, which thus helps democratize diffusion model training to broader users. At the core of our innovations is a new conditional score function at the patch level, where the patch location in the original image is included as additional coordinate channels, while the patch size is randomized and diversified throughout training to encode the cross-region dependency at multiple scales. Sampling with our method is as easy as in the original diffusion model. Through Patch Diffusion, we could achieve ≥2× faster training, while maintaining comparable or better generation quality. Patch Diffusion meanwhile improves the performance of diffusion models trained on relatively small datasets, e.g., as few as 5,000 images to train from scratch. We achieve outstanding FID scores in line with state-of-the-art benchmarks: 1.77 on CelebA-64×64, 1.93 on AFHQv2-Wild-64×64, and 2.72 on ImageNet-256×256. We share our code and pre-trained models in GitHub.more » « less
-
We propose a method to teach multiple large language models (LLM) to collaborate by interleaving their generations at the token level. We model the decision of which LLM generates the next token as a latent variable. By optimizing the marginal likelihood of a training set under our latent variable model, the base LLM automatically learns when to generate itself and when to call on one of the “assistant” language models to generate, all without direct supervision. Token-level collaboration during decoding allows for a fusion of each model’s expertise in a manner tailored to the specific task at hand. Our collaborative decoding is especially useful in cross-domain settings where a generalist base LLM learns to invoke domain ex- pert models. On instruction-following, domain- specific QA, and reasoning tasks, we show that the performance of the joint system exceeds that of the individual models. Through qualitative analysis of the learned latent decisions, we show models trained with our method exhibit several interesting collaboration patterns, e.g., template-filling.more » « less
-
Language models produce a distribution over the next token; can we use this information to recover the prompt tokens? We consider the problem of language model inversion and show that next-token probabilities contain a surprising amount of information about the preceding text. Often we can recover the text in cases where it is hidden from the user, motivating a method for recovering unknown prompts given only the model's current distribution output. We consider a variety of model access scenarios, and show how even without predictions for every token in the vocabulary we can recover the probability vector through search. On Llama-2 7b, our inversion method reconstructs prompts with a BLEU of 59 and token-level F1 of 78 and recovers 27% of prompts exactly. Code for reproducing all experiments is available at this http URL.more » « less
-
Tokenization is used almost universally by modern language models, enabling efficient text representation using multi-byte or multi-character tokens. However, prior work has shown that tokenization can introduce distortion into the model's generations, an issue known as the Prompt Boundary Problem (PBP). For example, users are often advised not to end their prompts with a space because it prevents the model from including the space as part of the next token. While this heuristic is effective in English, the underlying PBP continues to affect languages such as Chinese as well as code generation, where tokens often do not line up with word and syntactic boundaries. In this work, we present an inference-time method to convert any autoregressive LM with a BPE tokenizer into a character-level or byte-level LM. Our method efficiently solves the PBP and is also able to unify the vocabularies of language models with different tokenizers, allowing one to ensemble LMs with different tokenizers at inference time or transfer the post-training from one model to another using proxy-tuning. We demonstrate in experiments that the ensemble and proxy-tuned models outperform their constituents on downstream evals. Code is available at this https URL .more » « less
- Free Publicly Accessible Full Text
-
Accepted Manuscript1.0
- Conference Paper:
- The DOI is not currently available.
