Strong field ionization of molecules by intense laser pulses can be simulated by time-dependent configuration interaction (TD-CI) with a complex absorbing potential (CAP). Standard molecular basis sets need to be augmented with several sets of diffuse functions for effective interaction with the CAP. This dramatically increases the number of configurations and the cost of the TD-CI simulations as the size of the molecules increases. The cost can be reduced by making use of spin symmetry and by employing an orbital energy cut-off to limit the number of virtual orbitals used to construct the excited configurations. Greater reductions in the number of virtual orbitals can be obtained by examining their interaction with the absorbing potential during simulations and their contributions to the strong field ionization rate. This can be determined from the matrix elements of the absorbing potential and the TD-CI coefficients from test simulations. Compared to a simple 3 hartree cut-off in the orbital energies, these approaches reduce the number of virtual orbitals by 20% - 35% for neutral molecules and 5%-10% for cations. As a result, the cost of simulations is reduced by 35% - 60% for neutral molecules and 5% - 10% for cations. The number of virtual orbitals needed can also be estimated by second-order perturbation theory without the need for test simulations. The number of virtual orbitals can be reduced further by adapting orbitals to the laser field using natural orbitals derived from test simulations. This is particularly effective for cations, yielding reductions of more than 20%.
more »
« less
njdowdy/tpt-taxonomy: TPT Taxonomic Resource v2.0.0
This is the second public release of the taxonomic resources generated for the Terrestrial Parasite Tracker project. Some names given by list providers may be omitted due to being flagged for curatorial review for various reasons. Funded by National Science Foundation (US) grant DBI-1901932
more »
« less
- Award ID(s):
- 1901932
- PAR ID:
- 10650735
- Publisher / Repository:
- Zenodo
- Date Published:
- Edition / Version:
- v2.0.0
- Subject(s) / Keyword(s):
- taxonomy biodiversity informatics
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Call-By-Push-Value has famously subsumed both call-by-name and call-by-value by decomposing programs along the axis of values versus computations. Here, we introduce Call-By-Unboxed-Value which further decomposes programs along an orthogonal axis separating atomic versus complex. As the name suggests, these two dimensions make it possible to express the representations of values as boxed or unboxed, so that functions pass unboxed values as inputs and outputs. More importantly, Call-By-Unboxed-Value allows for an unrestricted mixture of polymorphism and unboxed types, giving a foundation for studying compilation techniques for polymorphism based on representation irrelevance. In this regard, we use Call-By-Unboxed-Value to formalize representation polymorphism independently of types; for the first time compiling untyped representation-polymorphic code, while nonetheless preserving types all the way to the machine.more » « less
-
Abstract Mercury (Hg) is a naturally occurring element that bonds with organic matter and, when converted to methylmercury, is a potent neurotoxicant. Here we estimate potential future releases of Hg from thawing permafrost for low and high greenhouse gas emissions scenarios using a mechanistic model. By 2200, the high emissions scenario shows annual permafrost Hg emissions to the atmosphere comparable to current global anthropogenic emissions. By 2100, simulated Hg concentrations in the Yukon River increase by 14% for the low emissions scenario, but double for the high emissions scenario. Fish Hg concentrations do not exceed United States Environmental Protection Agency guidelines for the low emissions scenario by 2300, but for the high emissions scenario, fish in the Yukon River exceed EPA guidelines by 2050. Our results indicate minimal impacts to Hg concentrations in water and fish for the low emissions scenario and high impacts for the high emissions scenario.more » « less
-
A model combines demographic data provided by the United States Census Bureau for 2021 with survey data on sexual activity from the Centers for Disease Control and Prevention to estimate the structure by age and sex of the sexually active population in the United States. It also provides the proportions of newly sexually active people by age and sex. The model is based on percentages of sexually active people by age and sex, and on an ordinary differential equation formalizing a “learning process” for the years 2009 to 2019. The data produced fit well with the empirical data for each age and sex.more » « less
-
Abstract A photocrosslinkable poly(N,N′‐diethylacrylamide) copolymer allows for the photolithographic fabrication of hydrogel sheets with nonuniform crosslinking density and swelling ratio. Using this material system, different 3D shapes with nonzero Gaussian curvatureKare successfully programmed by prescribing a “metric” defined by in‐plane variations in swelling. However, this methodology does not control the direction of buckling adopted by each positive K feature, and therefore cannot controllably select between different isometric shapes defined by a single metric. Here, by introducing gradients in swelling through the thickness of the gel sheet by tuning the absorption of the UV‐light used for crosslinking, a preferential buckling direction is locally specified for each feature by the direction of UV exposure. By also controlling the strength of coupling between neighboring features, this is shown to be an effective method to program buckling direction of each unit within a canonical corrugated surface shape.more » « less
An official website of the United States government
