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Abstract Copy number variation (CNV) is a major part of the genetic diversity segregating within populations, but remains poorly understood relative to single nucleotide variation. Here, we report on atRNAligase gene (Migut.N02091;RLG1a) exhibiting unprecedented, and fitness‐relevant,CNVwithin an annual population of the yellow monkeyflowerMimulus guttatus.RLG1a variation was associated with multiple traits in pooled population sequencing (PoolSeq) scans of phenotypic and phenological cohorts. Resequencing of inbred lines revealed intermediate‐frequency three‐copy variants ofRLG1a (trip+;5/35 = 14%), andtrip+lines exhibited elevatedRLG1a expression under multiple conditions.trip+carriers, in addition to being over‐represented in late‐flowering and large‐flowered PoolSeq populations, flowered later under stressful conditions in a greenhouse experiment (p < 0.05). In wild population samples, we discovered an additional rareRLG1a variant (high+) that carries 250–300 copies ofRLG1a totalling ~5.7 Mb (20–40% of a chromosome). In the progeny of ahigh+carrier, Mendelian segregation of diagnostic alleles andqPCR‐based copy counts indicate thathigh+is a single tandem array unlinked to the single‐copyRLG1a locus. In the wild,high+carriers had highest fitness in two particularly dry and/or hot years (2015 and 2017; bothp < 0.01), while single‐copy individuals were twice as fecund as eitherCNVtype in a lush year (2016:p < 0.005). Our results demonstrate fluctuating selection onCNVs affecting phenological traits in a wild population, suggest that planttRNAligases mediate stress‐responsive life‐history traits, and introduce a novel system for investigating the molecular mechanisms of gene amplification.
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Phenotypic Sorting of Pink Salmon Hatchery Strays May Alleviate Adverse Impacts of Reduced Variation in Fitness‐Associated Traits
ABSTRACT Maladapted immigrants may reduce wild population productivity and resilience, depending on the degree of fitness mismatch between dispersers and locals. Thus, domesticated individuals escaping into wild populations is a key conservation concern. In Prince William Sound, Alaska, over 700 million pink salmon (Oncorhynchus gorbuscha) are released annually from hatcheries, providing a natural experiment to characterize the mechanisms underlying impacts to wild populations. Using a dataset of > 200,000 pink salmon sampled from 30 populations over 8 years, we detected significant body size and phenological differences between hatchery‐ and wild‐origin spawners, likely driven by competitive differences during maturation and broodstock selection practices. Variation in traits was reduced in hatchery fish, raising biodiversity concerns. However, phenotypic traits of immigrants and locals were positively correlated. We discuss possible mechanisms that may explain this pattern and how it may reduce adverse impacts associated with reduced trait variation. This study suggests that domestication impacts are likely widespread, but local adaptation may be maintained by phenotypic sorting.
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- Award ID(s):
- 2022190
- PAR ID:
- 10658070
- Publisher / Repository:
- Ecology and Evolution
- Date Published:
- Journal Name:
- Ecology and Evolution
- Volume:
- 15
- Issue:
- 1
- ISSN:
- 2045-7758
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1002/ece3.70781
