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1. Kings of the North: Bridging Disciplines to Understand the Effects of Changing Climate on Chinook Salmon in the Arctic–Yukon–Kuskokwim Region

   https://doi.org/10.1002/fsh.10923  

   Feddern, Megan L.; Schoen, Erik R.; Shaftel, Rebecca; Cunningham, Curry J.; Chythlook, Craig; Connors, Brendan M.; Murdoch, Alyssa D.; von Biela, Vanessa R.; Woods, Brooke (August 2023, Fisheries)

   Understanding how species are responding to environmental change is a central challenge for stewards and managers of fish and wildlife who seek to maintain harvest opportunities for communities and Indigenous peoples. This is a particularly daunting but increasingly important task in remote, high‐latitude regions where environmental conditions are changing rapidly and data collection is logistically difficult. The Arctic–Yukon–Kuskokwim (AYK) region encompasses the northern extent of the Chinook Salmon Oncorhynchus tshawytscha range where populations are experiencing rapid rates of environmental change across both freshwater and marine habitats due to global climate change. Climate–salmon interactions in the AYK region are a particularly pressing issue as many local communities have a deep reliance on a subsistence way of life. Here, we synthesize perspectives shared at a recent workshop on Chinook Salmon declines in the AYK region. The objectives were to discuss current understandings of climate–Chinook Salmon interactions, develop a set of outstanding questions, review available data and its limitations in addressing these questions, and describe the perspectives expressed by participants in this workshop from diverse backgrounds. We conclude by suggesting pathways forward to integrate different types of information and build relationships among communities, academic partners, and fishery management agencies. 

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2. Density Dependence in Three Snake River Sockeye Salmon Nursery Lakes in Central Idaho

   https://doi.org/10.1002/nafm.10835  

   Griswold, Robert_G; Kohler, Andre_E; Tardy, Kurt_A; Griswold, Kitty_E; Taki, Doug (October 2022, North American Journal of Fisheries Management)

   Abstract Snake River Sockeye Salmon Oncorhynchus nerka, listed as an endangered species in 1991, currently inhabit three nursery lakes (Redfish, Pettit, and Alturas lakes) in the Sawtooth Valley, Idaho. Conspecific kokanee (lacustrine Sockeye Salmon) are also present in the lakes. Snake River Sockeye Salmon recovery efforts, initially focused on genetic conservation, are now attempting to rebuild naturally spawning populations using hatchery supplementation. However, in Sockeye Salmon nursery lakes, density dependence is frequently observed when elevated O. nerka abundance leads to declines in zooplankton biomass, body size, and shifts in community composition. In turn, these changes lead to reductions in juvenile O. nerka growth rates, survival, and adult returns. We examined a long-term data set of O. nerka population metrics and associated zooplankton community metrics. We found evidence of density dependence within and among nursery lakes. We detected differences in zooplankton biomass, lengths of preferred zooplankton prey (Daphnia spp. and cyclopoid copepods), parr growth rates, and age-1 smolt size among the three lakes. We found negative relationships between O. nerka density and zooplankton biomass and size. We identified positive relationships between zooplankton biomass and two response variables: smolt size at migration and growth rates of hatchery parr. The relationships were generally similar among lakes. Variable outcomes were a result of differences in O. nerka density (or zooplankton biomass), controlled primarily by the relative proportion of spawning and rearing habitat in each lake. Understanding unique lake habitats, ecological interactions, and the role of density dependence is germane to management of Snake River Sockeye Salmon populations. 

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3. Influence of environmental conditions at spawning sites and migration routes on adaptive variation and population connectivity in Chinook salmon

   https://doi.org/10.1002/ece3.8324  

   Alshwairikh, Yara A.; Kroeze, Shayla L.; Olsson, Jenny; Stephens‐Cardenas, Steve A.; Swain, William L.; Waits, Lisette P.; Horn, Rebekah L.; Narum, Shawn R.; Seaborn, Travis (November 2021, Ecology and Evolution)

   Abstract Many species that undergo long breeding migrations, such as anadromous fishes, face highly heterogeneous environments along their migration corridors and at their spawning sites. These environmental challenges encountered at different life stages may act as strong selective pressures and drive local adaptation. However, the relative influence of environmental conditions along the migration corridor compared with the conditions at spawning sites on driving selection is still unknown. In this study, we performed genome–environment associations (GEA) to understand the relationship between landscape and environmental conditions driving selection in seven populations of the anadromous Chinook salmon (Oncorhynchus tshawytscha)—a species of important economic, social, cultural, and ecological value—in the Columbia River basin. We extracted environmental variables for the shared migration corridors and at distinct spawning sites for each population, and used a Pool‐seq approach to perform whole genome resequencing. Bayesian and univariate GEA tests with migration‐specific and spawning site‐specific environmental variables indicated many more candidate SNPs associated with environmental conditions at the migration corridor compared with spawning sites. Specifically, temperature, precipitation, terrain roughness, and elevation variables of the migration corridor were the most significant drivers of environmental selection. Additional analyses of neutral loci revealed two distinct clusters representing populations from different geographic regions of the drainage that also exhibit differences in adult migration timing (summer vs. fall). Tests for genomic regions under selection revealed a strong peak on chromosome 28, corresponding to the GREB1L/ROCK1 region that has been identified previously in salmonids as a region associated with adult migration timing. Our results show that environmental variation experienced throughout migration corridors imposed a greater selective pressure on Chinook salmon than environmental conditions at spawning sites. 

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4. Different population trajectories of two reef‐building corals with similar life‐history traits

   https://doi.org/10.1111/1365-2656.13463  

   Shlesinger, Tom; van Woesik, Robert (March 2021, Journal of Animal Ecology)

   Abstract Increases in the frequency and intensity of acute and chronic disturbances are causing declines of coral reefs world‐wide. Although quantifying the responses of corals to acute disturbances is well documented, detecting subtle responses of coral populations to chronic disturbances is less common, but can also result in altered population and community structures.We investigated the population dynamics of two key reef‐building Merulinid coral species,Dipsastraea favusandPlatygyra lamellina, with similar life‐history traits, in the Gulf of Eilat and Aqaba, Red Sea from 2015 to 2018, to assess potential differences in their population trajectories.Demographic processes, which included rates of survival, growth, reproduction and recruitment were used to parametrize integral projection models and estimate population growth rates and the likely population trajectories of both coral species.The survival and reproduction rates of bothD. favusandP. lamellinawere positively related to coral colony size, and elasticity analyses showed that large colonies most influenced population dynamics. Although both species have similar life‐history traits and growth morphologies and are generally regarded as ‘stress‐tolerant’, the populations showed contrasting trajectories—D. favusappears to be increasing whereasP. lamellinaappears to be decreasing.As many corals have long‐life expectancies, the process of local and regional decline might be subtle and slow. Ecological assessments based on total living coral coverage, morphological groups or functional traits might overlook subtle, species‐specific trends. However, demographic approaches capable of detecting subtle species‐specific population changes can augment ecological studies and provide valuable early warning signs of decline before major coral loss becomes evident. 

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5. Remote sensing: generation of long‐term kelp bed data sets for evaluation of impacts of climatic variation

   https://doi.org/10.1002/ecy.3031  

   Hamilton, Sara L.; Bell, Tom W.; Watson, James R.; Grorud‐Colvert, Kirsten A.; Menge, Bruce A. (April 2020, Ecology)

   Abstract A critical tool in assessing ecosystem change is the analysis of long‐term data sets, yet such information is generally sparse and often unavailable for many habitats. Kelp forests are an example of rapidly changing ecosystems that are in most cases data poor. Because kelp forests are highly dynamic and have high intrinsic interannual variability, understanding how regional‐scale drivers are driving kelp populations—and particularly how kelp populations are responding to climate change—requires long‐term data sets. However, much of the work on kelp responses to climate change has focused on just a few, relatively long‐lived, perennial, canopy‐forming species. To understand how kelp populations with different life history traits are responding to climate‐related variability, we leverage 35 yr of Landsat satellite imagery to track the population size of an annual, ruderal kelp,Nereocystis luetkeana, across Oregon. We found high levels of interannual variability inNereocystiscanopy area and varying population trajectories over the last 35 yr. Surprisingly, OregonNereocystispopulation sizes were unresponsive to a 2014 marine heat wave accompanied by increases in urchin densities that decimated northern CaliforniaNereocystispopulations. Some OregonNereocystis populations have even increased in area relative to pre‐2014 levels. Analysis of environmental drivers found thatNereocystispopulation size was negatively correlated with estimated nitrate levels and positively correlated with winter wave height. This pattern is the inverse of the predicted relationship based on extensive prior work on the perennial kelpMacrocystis pyriferaand may be related to the annual life cycle ofNereocystis. This article demonstrates (1) the value of novel remote sensing tools to create long‐term data sets that may challenge our understanding of nearshore marine species and (2) the need to incorporate life history traits into our theory of how climate change will shape the ocean of the future. 

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