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Creators/Authors contains: "Agar, Joshua"

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  1. Free, publicly-accessible full text available October 27, 2025
  2. Abstract Direct electron detectors in scanning transmission electron microscopy give unprecedented possibilities for structure analysis at the nanoscale. In electronic and quantum materials, this new capability gives access to, for example, emergent chiral structures and symmetry-breaking distortions that underpin functional properties. Quantifying nanoscale structural features with statistical significance, however, is complicated by the subtleties of dynamic diffraction and coexisting contrast mechanisms, which often results in a low signal-to-noise ratio and the superposition of multiple signals that are challenging to deconvolute. Here we apply scanning electron diffraction to explore local polar distortions in the uniaxial ferroelectric Er(Mn,Ti)O3. Using a custom-designed convolutional autoencoder with bespoke regularization, we demonstrate that subtle variations in the scattering signatures of ferroelectric domains, domain walls, and vortex textures can readily be disentangled with statistical significance and separated from extrinsic contributions due to, e.g., variations in specimen thickness or bending. The work demonstrates a pathway to quantitatively measure symmetry-breaking distortions across large areas, mapping structural changes at interfaces and topological structures with nanoscale spatial resolution. 
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    Free, publicly-accessible full text available December 1, 2025
  3. Free, publicly-accessible full text available April 30, 2025
  4. Computational fluid dynamics (CFD) simulations are broadly used in many engineering and physics fields. CFD requires the solution of the Navier–Stokes (N-S) equations under complex flow and boundary conditions. However, applications of CFD simulations are computationally limited by the availability, speed, and parallelism of high-performance computing. To address this, machine learning techniques have been employed to create data-driven approximations for CFD to accelerate computational efficiency. Unfortunately, these methods predominantly depend on large labeled CFD datasets, which are costly to procure at the scale required for robust model development. In response, we introduce a weakly supervised approach that, through a multichannel input capturing boundary and geometric conditions, solves steady-state N-S equations. Our method achieves state-of-the-art results without relying on labeled simulation data, instead using a custom data-driven and physics-informed loss function and small-scale solutions to prime the model for solving the N-S equations. By training stacked models, we enhance resolution and predictability, yielding high-quality numerical solutions to N-S equations without hefty computational demands. Remarkably, our model, being highly adaptable, produces solutions on a 512 × 512 domain in a swift 7 ms, outpacing traditional CFD solvers by a factor of 1,000. This paves the way for real-time predictions on consumer hardware and Internet of Things devices, thereby boosting the scope, speed, and cost-efficiency of solving boundary-value fluid problems. 
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  5. Abstract High-throughput materials research is strongly required to accelerate the development of safe and high energy-density lithium-ion battery (LIB) applicable to electric vehicle and energy storage system. The artificial intelligence, including machine learning with neural networks such as Boltzmann neural networks and convolutional neural networks (CNN), is a powerful tool to explore next-generation electrode materials and functional additives. In this paper, we develop a prediction model that classifies the major composition (e.g., 333, 523, 622, and 811) and different states (e.g., pristine, pre-cycled, and 100 times cycled) of various Li(Ni, Co, Mn)O2(NCM) cathodes via CNN trained on scanning electron microscopy (SEM) images. Based on those results, our trained CNN model shows a high accuracy of 99.6% where the number of test set is 3840. In addition, the model can be applied to the case of untrained SEM data of NCM cathodes with functional electrolyte additives. 
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  6. Abstract Ferroelectrics, due to their polar nature and reversible switching, can be used to dynamically control surface chemistry for catalysis, chemical switching, and other applications such as water splitting. However, this is a complex phenomenon where ferroelectric domain orientation and switching are intimately linked to surface charges. In this work, the temperature‐induced domain behavior of ferroelectric‐ferroelastic domains in free‐standing BaTiO3films under different gas environments, including vacuum and oxygen‐rich, is studied by in situ scanning transmission electron microscopy (STEM). An automated pathway to statistically disentangle and detect domain structure transformations using deep autoencoders, providing a pathway towards real‐time analysis is also established. These results show a clear difference in the temperature at which phase transition occurs and the domain behavior between various environments, with a peculiar domain reconfiguration at low temperatures, from a‐c to a‐a at ≈60 °C. The vacuum environment exhibits a rich domain structure, while under the oxidizing environment, the domain structure is largely suppressed. The direct visualization provided by in situ gas and heating STEM allows to investigate the influence of external variables such as gas, pressure, and temperature, on oxide surfaces in a dynamic manner, providing invaluable insights into the intricate surface‐screening mechanisms in ferroelectrics. 
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  7. Abstract Machine learning (ML) has become critical for post-acquisition data analysis in (scanning) transmission electron microscopy, (S)TEM, imaging and spectroscopy. An emerging trend is the transition to real-time analysis and closed-loop microscope operation. The effective use of ML in electron microscopy now requires the development of strategies for microscopy-centric experiment workflow design and optimization. Here, we discuss the associated challenges with the transition to active ML, including sequential data analysis and out-of-distribution drift effects, the requirements for edge operation, local and cloud data storage, and theory in the loop operations. Specifically, we discuss the relative contributions of human scientists and ML agents in the ideation, orchestration, and execution of experimental workflows, as well as the need to develop universal hyper languages that can apply across multiple platforms. These considerations will collectively inform the operationalization of ML in next-generation experimentation. 
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