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Creators/Authors contains: "Ali, S"

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  1. Free, publicly-accessible full text available May 6, 2026
  2. Free, publicly-accessible full text available May 19, 2026
  3. Abstract One of the most fundamental characteristics of a biomaterial tailored for bone repair and regeneration is its ability to promote bone regeneration and healing of large defects. This work reports producing a functionalized and hieratically porous bone scaffold that significantly supports cell adhesion and proliferation by providing bone mimicry structure and controlled release of protein. The Slit Guidance Ligand 3 (SLIT3) protein was previously tested to promote bone formation and control the resorption process in natural bone healing. In this study, our goal was to design a nanocomposite bone scaffold to be functionalized with SLIT3 protein and then evaluate the uptake and release profile from surface into culture media to support bone marrow-derived mesenchymal stem cells (MSC) 3D culture. Indirect 3D printing of a polylactic-co-glycolic acid (PLGA), hydroxyapatite nanoparticles, and polydopamine coated (PLGA-HANPs-PDA) was utilized to obtain a hierarchically porous and SLIT3 protein-releasing scaffold. The produced scaffold was evaluated and optimized using chemical, architectural, mechanical, and biological characterization techniques. Optimal physicochemical properties resulted in a unique microstructure with an average pore size of 178.06 ± 45 µm, 63% porosity, and stable and homogenous chemical composition. Mechanical testing demonstrated a compression strength up to 1.5 MPa at 75% strain, with a compression modulus of 0.58 ± 0.05 MPa. Preliminary biological experiments showed that the scaffold exhibited gradual SLIT3 protein release, biodegradability, and reliable biocompatibility for MSC cell culture. Finally, we showed for first time the bioactivity of SLIT3 protein within PLGA-HANPs-PDA scaffold to promote attachment and growth of mesenchymal stem cell (MSCs) seeded in bone mimicry scaffold matrix. The collected findings will serve as a bedrock for thorough and targeted in vitro studies to evaluate anticipated osteogenesis the MSCs. 
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    Free, publicly-accessible full text available January 1, 2026
  4. Abstract Losses from catastrophic floods are driving intense efforts to increase preparedness and improve response to disastrous flood events by providing early warnings. Yet accurate flood forecasting remains a challenge due to uncertainty in modeling, calibrating, and validating a useful early warning system. This paper presents the Requisitely Simple (ReqSim) flood forecasting system that includes key variables and processes of basin hydrology and atmospheric forcing in a data-driven modeling framework. The simplicity of the modeling structure and data requirements of the system allows for customization and implementation in any medium to large rain-fed river basin globally, provided there are water level or discharge measurements at the forecast locations. The proposed system's efficacy is demonstrated in this paper through providing useful forecasts for various river basins around the world. This include 3–10-day forecasts for the Ganges and Brahmaputra rivers in South Asia, 2–3-day forecast for the Amur and Yangtze rivers in East Asia, 5–10-day forecasts for the Niger, Congo and Zambezi rivers in West and Central Africa, 6–8-day forecasts for the Danube River in Europe, 2–5-day forecasts for the Parana River in South America, and 2–7-day forecasts for the Mississippi, Missouri, Ohio, and Arkansas rivers in the USA. The study also quantifies the effect of basin size, topography, hydrometeorology, and river flow controls on forecast accuracy and lead times. Results indicate that ReqSim's forecasts perform better in river systems with moderate slopes, high flow persistence, and less flow controls. The simple structure, minimal data requirements, ease of operation, and useful operational accuracy make ReqSim an attractive option for effective real-time flood forecasting in medium and large river basins worldwide. 
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  5. Clark, Tom (Ed.)
    Abstract Do lower court judges influence the content of Supreme Court opinions in the United Kingdom? Leveraging original data, we analyze opinion language adoption practices of the UK Supreme Court. We advance a theory where the justices’ choices to adopt language from lower court opinions are influenced by Supreme Court-level attributes and Court of Appeal case characteristics. We uncover compelling evidence that UK Supreme Court justices incorporate language extensively from the written opinions of the Court of Appeal of England and Wales. Our findings have significant implications for opinion formulation, doctrinal development, and higher and lower court interactions within comparative courts. 
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  6. Meier-Schellersheim, Martin (Ed.)
    Biochemical signaling pathways in living cells are often highly organized into spatially segregated volumes, membranes, scaffolds, subcellular compartments, and organelles comprising small numbers of interacting molecules. At this level of granularity stochastic behavior dominates, well-mixed continuum approximations based on concentrations break down and a particle-based approach is more accurate and more efficient. We describe and validate a new version of the open-source MCell simulation program (MCell4), which supports generalized 3D Monte Carlo modeling of diffusion and chemical reaction of discrete molecules and macromolecular complexes in solution, on surfaces representing membranes, and combinations thereof. The main improvements in MCell4 compared to the previous versions, MCell3 and MCell3-R, include a Python interface and native BioNetGen reaction language (BNGL) support. MCell4’s Python interface opens up completely new possibilities for interfacing with external simulators to allow creation of sophisticated event-driven multiscale/multiphysics simulations. The native BNGL support, implemented through a new open-source library libBNG (also introduced in this paper), provides the capability to run a given BNGL model spatially resolved in MCell4 and, with appropriate simplifying assumptions, also in the BioNetGen simulation environment, greatly accelerating and simplifying model validation and comparison. 
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  7. Sn clusters have been grown on highly oriented pyrolytic graphite (HOPG) surfaces and investigated by scanning tunneling microscopy (STM), X-ray photoelectron spectroscopy (XPS), and density functional theory (DFT) calculations. At low Sn coverages ranging from 0.02-0.25 ML, Sn grows as small clusters that nucleate uniformly on the terraces. This behavior is in contrast with the growth of transition metals such as Pd, Pt, and Re on HOPG, given that these metals form large clusters with preferential nucleation for Pd and Pt at the favored low-coordination step edges. XPS experiments show no evidence of Sn-HOPG interactions, and the activation energy barrier for diffusion calculated for Sn on HOPG (0.06 eV) is lower or comparable to those of Pd, Pt and Re (0.04, 0.22, and 0.61 eV, respectively), indicating that the growth of the Sn clusters is not kinetically limited by diffusion on the surface. DFT calculations of the binding energy/atom as a function of cluster size demonstrate that the energies of the Sn clusters on HOPG are similar to that of Sn atoms in the bulk for Sn clusters larger than 10 atoms, whereas the Pt, Pd, and Re clusters on HOPG have energies that are 1-2 eV higher than in the bulk. Thus, there is no thermodynamic driving force for Sn atoms to form clusters larger than 10 atoms on HOPG, unlike for Pd, Pt, and Re atoms, which minimize their energy by aggregating into larger, more bulk-like clusters. In addition, annealing the Sn/HOPG clusters to 800 K and 950 K does not increase the cluster size but instead removes the larger clusters, while Sn deposition at 810 K induces the appearance of protrusions that are believed to be from subsurface Sn. DFT studies indicate that it is energetically favorable for a Sn atom to exist in the subsurface layer only when the Sn atom is located at a subsurface vacancy. 
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  8. In this study, we use the EPIC-I I (exposure, persuasion, identification, commitment, and implementation) framework as a lens for viewing instructor perceptions of including diversity, equity, and inclusion (DEI) activities in engineering and computer science undergraduate courses. The results provided evidence of three findings: (a) evidence existed of faculty participation at all levels of EPIC-I, (b) in moving through the EPIC-I framework, the evidence became scanter, and (c) although both groups were small, approximately equal numbers of participants were openly negative as were actively implementing additional DEI supporting activities in their classes. Implications and future work are discussed. 
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  9. Free, publicly-accessible full text available June 1, 2026