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  1. Abstract

    Tropical forest diversity governs forest structures, compositions, and influences the ecosystem response to environmental changes. Better representation of forest diversity in ecosystem demography (ED) models within Earth system models is thus necessary to accurately capture and predict how tropical forests affect Earth system dynamics subject to climate changes. However, achieving forest coexistence in ED models is challenging due to their computational expense and limited understanding of the mechanisms governing forest functional diversity. This study applies the advanced Multi‐Objective Population‐based Parallel Local Surrogate‐assisted search (MOPLS) optimization algorithm to simultaneously calibrate ecosystem fluxes and coexistence of two physiologically distinct tropical forest species in a size‐ and age‐structured ED model with realistic representation of wood harvest. MOPLS exhibits satisfactory model performance, capturing hydrological and biogeochemical dynamics observed in Barro Colorado Island, Panama, and robustly achieving coexistence for the two representative forest species. This demonstrates its effectiveness in calibrating tropical forest coexistence. The optimal solution is applied to investigate the recovery trajectories of forest biomass after various intensities of clear‐cut deforestation. We find that a 20% selective logging can take approximately 40 years for aboveground biomass to return to the initial level. This is due to the slow recovery rate of late successional trees, which only increases by 4% over the 40‐year period. This study lays the foundation to calibrate coexistence in ED models. MOPLS can be an effective tool to help better represent tropical forest diversity in Earth system models and inform forest management practices.

     
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    Free, publicly-accessible full text available August 1, 2025
  2. Extending and safeguarding tropical forest ecosystems is critical for combating climate change and biodiversity loss. One of its constituents, lianas, is spreading and increasing in abundance on a global scale. This is particularly concerning as lianas negatively impact forests’ carbon fluxes, dynamics, and overall resilience, potentially exacerbating both crises. While possibly linked to climate-change-induced atmospheric CO2elevation and drought intensification, the reasons behind their increasing abundance remain elusive. Prior research shows distinct physiological differences between lianas and trees, but it is unclear whether these differences confer a demographic advantage to lianas with climate change. Guided by extensive datasets collected in Panamanian tropical forests, we developed a tractable model integrating physiology, demography, and epidemiology. Our findings suggest that CO2fertilization, a climate change factor promoting forest productivity, gives lianas a demographic advantage. Conversely, factors such as extreme drought generally cause a decrease in liana prevalence. Such a decline in liana prevalence is expected from a physiological point of view because lianas have drought-sensitive traits. However, our analysis underscores the importance of not exclusively relying on physiological processes, as interactions with demographic mechanisms (i.e., the forest structure) can contrast these expectations, causing an increase in lianas with drought. Similarly, our results emphasize that identical physiological responses between lianas and trees still lead to liana increase. Even if lianas exhibit collinear but weaker responses in their performance compared to trees, a temporary liana prevalence increase might manifest driven by the faster response time of lianas imposed by their distinct life-history strategies than trees.

     
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    Free, publicly-accessible full text available August 20, 2025
  3. Free, publicly-accessible full text available May 1, 2025
  4. Synopsis

    Classic debates in community ecology focused on the complexities of considering an ecosystem as a super-organ or organism. New consideration of such perspectives could clarify mechanisms underlying the dynamics of forest carbon dioxide (CO2) uptake and water vapor loss, important for predicting and managing the future of Earth’s ecosystems and climate system. Here, we provide a rubric for considering ecosystem traits as aggregated, systemic, or emergent, i.e., representing the ecosystem as an aggregate of its individuals or as a metaphorical or literal super-organ or organism. We review recent approaches to scaling-up plant water relations (hydraulics) concepts developed for organs and organisms to enable and interpret measurements at ecosystem-level. We focus on three community-scale versions of water relations traits that have potential to provide mechanistic insight into climate change responses of forest CO2 and H2O gas exchange and productivity: leaf water potential (Ψcanopy), pressure volume curves (eco-PV), and hydraulic conductance (Keco). These analyses can reveal additional ecosystem-scale parameters analogous to those typically quantified for leaves or plants (e.g., wilting point and hydraulic vulnerability) that may act as thresholds in forest responses to drought, including growth cessation, mortality, and flammability. We unite these concepts in a novel framework to predict Ψcanopy and its approaching of critical thresholds during drought, using measurements of Keco and eco-PV curves. We thus delineate how the extension of water relations concepts from organ- and organism-scales can reveal the hydraulic constraints on the interaction of vegetation and climate and provide new mechanistic understanding and prediction of forest water use and productivity.

     
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  5. ABSTRACT

    Conspecific density dependence (CDD) in plant populations is widespread, most likely caused by local‐scale biotic interactions, and has potentially important implications for biodiversity, community composition, and ecosystem processes. However, progress in this important area of ecology has been hindered by differing viewpoints on CDD across subfields in ecology, lack of synthesis across CDD‐related frameworks, and misunderstandings about how empirical measurements of local CDD fit within the context of broader ecological theories on community assembly and diversity maintenance. Here, we propose a conceptual synthesis of local‐scale CDD and its causes, including species‐specific antagonistic and mutualistic interactions. First, we compare and clarify different uses of CDD and related concepts across subfields within ecology. We suggest the use of local stabilizing/destabilizing CDD to refer to the scenario where local conspecific density effects are more negative/positive than heterospecific effects. Second, we discuss different mechanisms for local stabilizing and destabilizing CDD, how those mechanisms are interrelated, and how they cut across several fields of study within ecology. Third, we place local stabilizing/destabilizing CDD within the context of broader ecological theories and discuss implications and challenges related to scaling up the effects of local CDD on populations, communities, and metacommunities. The ultimate goal of this synthesis is to provide a conceptual roadmap for researchers studying local CDD and its implications for population and community dynamics.

     
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    Free, publicly-accessible full text available September 1, 2025
  6. Abstract

    Climate change is rapidly altering composition, structure, and functioning of the boreal biome, across North America often broadly categorized into ecoregions. The resulting complex changes in different ecoregions present a challenge for efforts to accurately simulate carbon dioxide (CO2) and energy exchanges between boreal forests and the atmosphere with terrestrial ecosystem models (TEMs). Eddy covariance measurements provide valuable information for evaluating the performance of TEMs and guiding their development. Here, we compiled a boreal forest model benchmarking dataset for North America by harmonizing eddy covariance and supporting measurements from eight black spruce (Picea mariana)-dominated, mature forest stands. The eight forest stands, located in six boreal ecoregions of North America, differ in stand characteristics, disturbance history, climate, permafrost conditions and soil properties. By compiling various data streams, the benchmarking dataset comprises data to parameterize, force, and evaluate TEMs. Specifically, it includes half-hourly, gap-filled meteorological forcing data, ancillary data essential for model parameterization, and half-hourly, gap-filled or partitioned component flux data on CO2(net ecosystem production, gross primary production [GPP], and ecosystem respiration [ER]) and energy (latent [LE] and sensible heat [H]) and their daily aggregates screened based on half-hourly gap-filling quality criteria. We present a case study with the Canadian Land Surface Scheme Including Biogeochemical Cycles (CLASSIC) to: (1) demonstrate the utility of our dataset to benchmark TEMs and (2) provide guidance for model development and refinement. Model skill was evaluated using several statistical metrics and further examined through the flux responses to their environmental controls. Our results suggest that CLASSIC tended to overestimate GPP and ER among all stands. Model performance regarding the energy fluxes (i.e., LE and H) varied greatly among the stands and exhibited a moderate correlation with latitude. We identified strong relationships between simulated fluxes and their environmental controls except for H, thus highlighting current strengths and limitations of CLASSIC.

     
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  7. Abstract Aim Understanding the considerable variability and drivers of global leaf photosynthetic capacity [indicated by the maximum carboxylation rate standardized to 25°C ( V c,max25 )] is an essential step for accurate modelling of terrestrial plant photosynthesis and carbon uptake under climate change. Although current environmental conditions have often been connected with empirical and theoretical models to explain global V c,max25 variability through acclimatization and adaptation, long‐term evolutionary history has largely been neglected, but might also explicitly play a role in shaping the V c,max25 variability. Location Global. Time period Contemporary. Major taxa studied Terrestrial plants. Methods We compiled a geographically comprehensive global dataset of V c,max25 for C 3 plants ( n  = 6917 observations from 2157 species and 425 sites covering all major biomes world‐wide), explored the biogeographical and phylogenetic patterns of V c,max25 , and quantified the relative importance of current environmental factors and evolutionary history in driving global V c,max25 variability. Results We found that V c,max25 differed across different biomes, with higher mean values in relatively drier regions, and across different life‐forms, with higher mean values in non‐woody relative to woody plants and in legumes relative to non‐leguminous plants. The values of V c,max25 displayed a significant phylogenetic signal and diverged in a contrasting manner across phylogenetic groups, with a significant trend along the evolutionary axis towards a higher V c,max25 in more modern clades. A Bayesian phylogenetic linear mixed model revealed that evolutionary history (indicated by phylogeny and species) explained nearly 3‐fold more of the variation in global V c,max25 than present‐day environment (53 vs. 18%). Main conclusions These findings contribute to a comprehensive assessment of the patterns and drivers of global V c,max25 variability, highlighting the importance of evolutionary history in driving global V c,max25 variability, hence terrestrial plant photosynthesis. 
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  8. Abstract

    Arctic wetlands are known methane (CH4) emitters but recent studies suggest that the Arctic CH4sink strength may be underestimated. Here we explore the capacity of well-drained Arctic soils to consume atmospheric CH4using >40,000 hourly flux observations and spatially distributed flux measurements from 4 sites and 14 surface types. While consumption of atmospheric CH4occurred at all sites at rates of 0.092 ± 0.011 mgCH4 m−2 h−1(mean ± s.e.), CH4uptake displayed distinct diel and seasonal patterns reflecting ecosystem respiration. Combining in situ flux data with laboratory investigations and a machine learning approach, we find biotic drivers to be highly important. Soil moisture outweighed temperature as an abiotic control and higher CH4uptake was linked to increased availability of labile carbon. Our findings imply that soil drying and enhanced nutrient supply will promote CH4uptake by Arctic soils, providing a negative feedback to global climate change.

     
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  9. null (Ed.)
    Many tropical regions are experiencing an intensification of drought, with increasing severity and frequency of the events. However, the forest ecosystem response to these changes is still highly uncertain. It has been hypothesized that on short time scales (from diurnal to seasonal), tropical forests respond to water stress by physiological controls, such as stomata regulation and phenological adjustment, to control increasing atmospheric water demand and cope with reduced water supply. However, the interactions among biological processes and co-varying environmental factors that determine the ecosystem-level fluxes are still unclear. Furthermore, climate variability at longer time scales, such as that generated by ENSO, produces less predictable effects, which might vary among forests and ecoregions within the tropics. This study will present some emerging patterns of response to water stress from five years of observations of water, carbon, and energy fluxes on the seasonal tropical forest in Barro Colorado Island (Panama), including an increase in productivity during the 2015 El Niño. We will show how these responses will depend critically on the combination of environmental factors experienced by the forest along the seasonal cycle. These results suggest a critical role of plant hydraulics in mediating the response to water stress on a broad range of temporal scales, including during the wet seasons when water availability is not a limiting factor. The study also found that the response to large-scale drought events is contingent and might produce a different outcome in different tropical forest areas. 
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