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Creators/Authors contains: "Graham, Matthew"

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  1. Free, publicly-accessible full text available July 1, 2025
  2. The construction of bounded-degree plane geometric spanners has been a focus of interest since 2002 when Bose, Gudmundsson, and Smid proposed the first algorithm to construct such spanners. To date, 11 algorithms have been designed with various tradeoffs in degree and stretch-factor. We have implemented these sophisticated spanner algorithms in C ++ using the CGAL library and experimented with them using large synthetic and real-world pointsets. Our experiments have revealed their practical behavior and real-world efficacy. We share the implementations via GitHub for broader uses and future research. We design and engineer EstimateStretchFactor , a simple practical algorithm, which can estimate stretch-factors (obtains lower bounds on the exact stretch-factors) of geometric spanners—a challenging problem for which no practical algorithm is known yet. In our experiments with bounded-degree plane geometric spanners, we found that EstimateStretchFactor estimated stretch-factors almost precisely. Further, it gave linear runtime performance in practice for the pointset distributions considered in this work, making it much faster than the naive Dijkstra-based algorithm for calculating stretch-factors. 
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  3. Abstract We present an analysis of NuSTAR X-ray observations of three active galactic nuclei (AGN) that were identified as candidate subparsec binary supermassive black hole (SMBH) systems in the Catalina Real-Time Transient Survey based on apparent periodicity in their optical light curves. Simulations predict that close-separation accreting SMBH binaries will have different X-ray spectra than single accreting SMBHs. We previously observed these AGN with Chandra and found no differences between their low-energy X-ray properties and the larger AGN population. However, some models predict differences to be more prominent at energies higher than probed by Chandra. We find that even at the higher energies probed by NuSTAR, the spectra of these AGN are indistinguishable from the larger AGN population. This could rule out models predicting large differences in the X-ray spectra in the NuSTAR bands. Alternatively, it might mean that these three AGN are not binary SMBHs. 
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  4. Non-equilibrium photocarriers in multilayer WSe2injected by femtosecond laser pulses exhibit extraordinary nonlinear dynamics in the presence of intense THz fields. The THz absorption in optically excited WSe2rises rapidly in the low THz field regime and gradually ramps up at high intensities. The strong THz pulses drive the photocarriers into sidebands of higher mobility and release trapped charge carriers, which consequently enhance the transient conductivity of WSe2. The spectrally analyzed conductivity reveals distinctive features, indicating that the photocarriers undergo resonant interactions such as carrier-photon scattering. 
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  5. Abstract We present the tidal disruption event (TDE) AT2022lri, hosted in a nearby (≈144 Mpc) quiescent galaxy with a low-mass massive black hole (104M<MBH< 106M). AT2022lri belongs to the TDE-H+He subtype. More than 1 Ms of X-ray data were collected with NICER, Swift, and XMM-Newton from 187 to 672 days after peak. The X-ray luminosity gradually declined from 1.5 × 1044erg s−1to 1.5 × 1043erg s−1and remains much above the UV and optical luminosity, consistent with a super-Eddington accretion flow viewed face-on. Sporadic strong X-ray dips atop a long-term decline are observed, with a variability timescale of ≈0.5 hr–1 days and amplitude of ≈2–8. When fitted with simple continuum models, the X-ray spectrum is dominated by a thermal disk component with inner temperature going from ∼146 to ∼86 eV. However, there are residual features that peak around 1 keV, which, in some cases, cannot be reproduced by a single broad emission line. We analyzed a subset of time-resolved spectra with two physically motivated models describing a scenario either where ionized absorbers contribute extra absorption and emission lines or where disk reflection plays an important role. Both models provide good and statistically comparable fits, show that the X-ray dips are correlated with drops in the inner disk temperature, and require the existence of subrelativistic (0.1–0.3c) ionized outflows. We propose that the disk temperature fluctuation stems from episodic drops of the mass accretion rate triggered by magnetic instabilities or/and wobbling of the inner accretion disk along the black hole’s spin axis. 
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    Free, publicly-accessible full text available November 1, 2025
  6. Although many studies have examined how taxa responded to Pleistocene climate fluctuations in the Appalachian Mountains, impacts on high-elevation endemics of Central Appalachia are not yet understood. We use mitochondrial (ND4 & Cytb) and nuclear (GAPD) DNA sequences to investigate the phylogeography of the Cow Knob Salamander (Plethodon punctatus), a woodland species from Central Appalachian highlands thought to have origins in the Pleistocene. Data from 72 tail tips representing 25 sites revealed that the species comprises two geographically cohesive mitochondrial clades with a narrow, putative contact zone on Shenandoah Mountain. Molecular clock estimates indicate the clades diverged in the Middle Pleistocene. The population size of the Southern clade appears to have remained stable for at least 50,000 years. Despite spanning several isolated mountain systems, the Northern clade has exceptionally low genetic diversity, probably due to recent demographic expansion. Palaeodemographic hypothesis testing supported a scenario in which a founder effect characterized the Northern clade as it diverged from the Southern clade. Species distribution models predicted no suitable habitat for the species during the Last Glacial Maximum. Ultimately, Pleistocene glacial climates may have driven the species from the northern half of its current range, with recolonization events by members of the Northern clade as climates warmed. Density dependent processes may now maintain a narrow contact zone between the two clades. 
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  7. Abstract Quasars are bright and unobscured active galactic nuclei (AGN) thought to be powered by the accretion of matter around supermassive black holes at the centers of galaxies. The temporal variability of a quasar’s brightness contains valuable information about its physical properties. The UV/optical variability is thought to be a stochastic process, often represented as a damped random walk described by a stochastic differential equation (SDE). Upcoming wide-field telescopes such as the Rubin Observatory Legacy Survey of Space and Time (LSST) are expected to observe tens of millions of AGN in multiple filters over a ten year period, so there is a need for efficient and automated modeling techniques that can handle the large volume of data. Latent SDEs are machine learning models well suited for modeling quasar variability, as they can explicitly capture the underlying stochastic dynamics. In this work, we adapt latent SDEs to jointly reconstruct multivariate quasar light curves and infer their physical properties such as the black hole mass, inclination angle, and temperature slope. Our model is trained on realistic simulations of LSST ten year quasar light curves, and we demonstrate its ability to reconstruct quasar light curves even in the presence of long seasonal gaps and irregular sampling across different bands, outperforming a multioutput Gaussian process regression baseline. Our method has the potential to provide a deeper understanding of the physical properties of quasars and is applicable to a wide range of other multivariate time series with missing data and irregular sampling. 
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  8. Fraser, Bonnie (Ed.)
    Abstract Over 400 million years old, scorpions represent an ancient group of arachnids and one of the first animals to adapt to life on land. Presently, the lack of available genomes within scorpions hinders research on their evolution. This study leverages ultralong nanopore sequencing and Pore-C to generate the first chromosome-level assembly and annotation for the desert hairy scorpion, Hadrurus arizonensis. The assembled genome is 2.23 Gb in size with an N50 of 280 Mb. Pore-C scaffolding reoriented 99.6% of bases into nine chromosomes and BUSCO identified 998 (98.6%) complete arthropod single copy orthologs. Repetitive elements represent 54.69% of the assembled bases, including 872,874 (29.39%) LINE elements. A total of 18,996 protein-coding genes and 75,256 transcripts were predicted, and extracted protein sequences yielded a BUSCO score of 97.2%. This is the first genome assembled and annotated within the family Hadruridae, representing a crucial resource for closing gaps in genomic knowledge of scorpions, resolving arachnid phylogeny, and advancing studies in comparative and functional genomics. 
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  9. ABSTRACT Stars embedded in active galactic nucleus (AGN) discs or captured by them may scatter onto the supermassive black hole (SMBH), leading to a tidal disruption event (TDE). Using the moving-mesh hydrodynamics simulations with arepo, we investigate the dependence of debris properties in in-plane TDEs in AGN discs on the disc density and the orientation of stellar orbits relative to the disc gas (pro- and retro-grade). Key findings are: (1) Debris experiences continuous perturbations from the disc gas, which can result in significant and continuous changes in debris energy and angular momentum compared to ‘naked’ TDEs. (2) Above a critical density of a disc around an SMBH with mass M• [ρcrit ∼ 10−8 g cm−3 (M•/106 M⊙)−2.5] for retrograde stars, both bound and unbound debris is fully mixed into the disc. The density threshold for no bound debris return, inhibiting the accretion component of TDEs, is $$\rho _{\rm crit,bound} \sim 10^{-9}{\rm g~cm^{-3}}(M_{\bullet }/10^{6}\, {\rm M}_{\odot })^{-2.5}$$. (3) Observationally, AGN-TDEs transition from resembling naked TDEs in the limit of ρdisc ≲ 10−2ρcrit,bound to fully muffled TDEs with associated inner disc state changes at ρdisc ≳ ρcrit,bound, with a superposition of AGN + TDE in between. Stellar or remnant passages themselves can significantly perturb the inner disc. This can lead to an immediate X-ray signature and optically detectable inner disc state changes, potentially contributing to the changing-look AGN phenomenon. (4) Debris mixing can enrich the average disc metallicity over time if the star’s metallicity exceeds that of the disc gas. We point out that signatures of AGN-TDEs may be found in large AGN surveys. 
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