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Current AI-assisted protein design utilizes mainly protein sequential and structural information. Meanwhile, there exists tremendous knowledge curated by humans in text format describing proteins’ high-level functionalities, yet whether the incorporation of such text data can help in protein design tasks has not been explored. To bridge this gap, we propose ProteinDT, a multimodal framework that leverages textual descriptions for protein design. ProteinDT consists of three consecutive steps: ProteinCLAP, which aligns the representation of two modalities, a facilitator that generates the protein representation from the text modality and a decoder that creates the protein sequences from the representation. To train ProteinDT, we construct a large dataset, SwissProtCLAP, with 441,000 text and protein pairs. We quantitatively verify the effectiveness of ProteinDT on three challenging tasks: (1) over 90% accuracy for text-guided protein generation; (2) best hit ratio on 12 zero-shot text-guided protein editing tasks; (3) superior performance on four out of six protein property prediction benchmarks. 

Abstract. Field-deployable real-time aerosol mass spectrometers (AMSs) typically use an aerodynamic lens as an inlet that collimates aerosols into a narrow beam over a wide range of particle sizes. Such lenses need constant upstream pressure to work consistently. Deployments in environments where the ambient pressure changes, e.g., on aircraft, typically use pressure-controlled inlets (PCIs). These have performed less well for supermicron aerosols, such as the larger particles in stratospheric air and some urban hazes. In this study, we developed and characterized a new PCI design (“CU PCI-D”) coupled with a recently developed PM2.5 aerodynamic lens, with the goal of sampling the full accumulation mode of ambient aerosols with minimal losses up to upper troposphere and lower stratosphere (UTLS) altitudes. A new computer-controlled lens alignment system and a new 2D particle beam imaging device that improves upon the Aerodyne aerosol beam width probe (BWP) have been developed and tested. These techniques allow for fast automated aerosol beam width and position measurements and ensure the aerodynamic lens is properly aligned and characterized for accurate quantification, in particular for small sizes that are hard to access with monodisperse measurements. The automated lens alignment tool also allows position-dependent thermal decomposition to be investigated on the vaporizer surface. The CU PCI-D was tested on the TI3GER campaign aboard the NCAR/NSF G-V aircraft. Based on comparisons with the co-sampling UHSAS particle sizer, the CU aircraft AMS with the modified PCI consistently measured ∼ 89 % of the accumulation-mode particle mass in the UTLS. 

Abstract Quantifying ecosystem resilience to disturbance is important for understanding the effects of disturbances on ecosystems, especially in an era of rapid global change. However, there are few studies that have used standardized experimental disturbances to compare resilience patterns across abiotic gradients in real‐world ecosystems. Theoretical studies have suggested that increased return times are associated with increasing variance during recovery from disturbance. However, this notion has rarely been explicitly tested in field, in part due to the challenges involved in obtaining long‐term experimental data. In this study, we examined resilience to disturbance of 12 coastal marsh sites (five low‐salinity and seven polyhaline [=salt] marshes) along a salinity gradient in Georgia, USA. We found that recovery times after experimental disturbance ranged from 7 to >127 months, and differed among response variables (vegetation height, cover and composition). Recovery rates decreased along the stress gradient of increasing salinity, presumably due to stress reducing plant vigor, but only when low‐salinity and polyhaline sites were analyzed separately, indicating a strong role for traits of dominant plant species. The coefficient of variation of vegetation cover and height in control plots did not vary with salinity. In disturbed plots, however, the coefficient of variation (CV) was consistently elevated during the recovery period and increased with salinity. Moreover, higher CV values during recovery were correlated with slower recovery rates. Our results deepen our understanding of resilience to disturbance in natural ecosystems, and point to novel ways that variance can be used either to infer recent disturbance, or, if measured in areas with a known disturbance history, to predict recovery patterns. 

Active exoskeletons are emerging as ergonomic solutions in the construction sector to reduce work-related musculoskeletal injuries. While the benefits of active exoskeletons are promising, they can also cause increased muscle activity, leading to local muscular fatigue. This study aimed to examine the impact of the active exoskeleton system on the muscular activity of construction workers during common construction activities. Ten subjects completed material handling tasks under two weight conditions (10 and 30 lbs) in a lab-controlled environment, with and without using an active exoskeleton. Portable electromyography (EMG) sensors were used to measure lumbar erector spinae (LES) muscle activity in each condition. Four descriptive statistics features in the time and frequency domains were extracted from the collected signals. Results of the t-test showed a significant difference in the physiological metrics extracted from the subjects’ EMG signals of the LES muscle. Findings demonstrated that using active exoskeletons reduces the internal muscle force in the lower back regions of construction workers. 

Abstract The first near IR fluorescent probe for the chemoselective and enantioselective recognition of arginine in aqueous solution is reported in this work. This probe, made of a 1,1’‐binaphthyl‐based chiral aldehyde unit and a rhodamine‐based near IR chromophore, in combination with La³⁺exhibits highly chemoselective as well as enantioselective fluorescent enhancement with arginine at λ=764 nm upon excitation at λ=690 nm. Little or no fluorescent response is observed toward the chirality miss‐matched arginine enantiomer or other common amino acids and their enantiomers. This probe also allows visual discrimination of the arginine enantiomers because of its fast and distinct color change upon interaction with the substrate.