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ABSTRACT Permafrost microbial research has flourished in the past decades, due in part to improvements in sampling and molecular techniques, but also the increased focus on the permafrost greenhouse gas feedback to climate change and other ecological processes in high latitude and alpine permafrost soils. Permafrost microorganisms are adapted to these extreme environments and remain active at low temperatures and when resources are limited. They are also an important component of global elemental cycles as they regulate organic matter turnover and greenhouse gas production, particularly as permafrost thaws. Here we review the permafrost microbiology literature coupled with an exploration of its historical aspects, with a particular focus on a new understanding advanced by molecular biology techniques. We further identify knowledge gaps and ways forward to improve our understanding of microbial contributions to ecosystem biogeochemistry of permafrost‐affected systems. 

Abstract Northern peatlands are a globally significant source of methane (CH₄), and emissions are projected to increase due to warming and permafrost loss. Understanding the microbial mechanisms behind patterns in CH₄production in peatlands will be key to predicting annual emissions changes, with stable carbon isotopes (δ¹³C‐CH₄) being a powerful tool for characterizing these drivers. Given that δ¹³C‐CH₄is used in top‐down atmospheric inversion models to partition sources, our ability to model CH₄production pathways and associated δ¹³C‐CH₄values is critical. We sought to characterize the role of environmental conditions, including hydrologic and vegetation patterns associated with permafrost thaw, on δ¹³C‐CH₄values from high‐latitude peatlands. We measured porewater and emitted CH₄stable isotopes, pH, and vegetation composition from five boreal‐Arctic peatlands. Porewater δ¹³C‐CH₄was strongly associated with peatland type, with δ¹³C enriched values obtained from more minerotrophic fens (−61.2 ± 9.1‰) compared to permafrost‐free bogs (−74.1 ± 9.4‰) and raised permafrost bogs (−81.6 ± 11.5‰). Variation in porewater δ¹³C‐CH₄was best explained by sedge cover, CH₄concentration, and the interactive effect of peatland type and pH (r² = 0.50,p < 0.001). Emitted δ¹³C‐CH₄varied greatly but was positively correlated with porewater δ¹³C‐CH₄. We calculated a mixed atmospheric δ¹³C‐CH₄value for northern peatlands of −65.3 ± 7‰ and show that this value is more sensitive to landscape drying than wetting under permafrost thaw scenarios. Our results suggest northern peatland δ¹³C‐CH₄values are likely to shift in the future which has important implications for source partitioning in atmospheric inversion models. 

Abstract Tundra and boreal ecosystems encompass the northern circumpolar permafrost region and are experiencing rapid environmental change with important implications for the global carbon (C) budget. We analysed multi-decadal time series containing 302 annual estimates of carbon dioxide (CO₂) flux across 70 permafrost and non-permafrost ecosystems, and 672 estimates of summer CO₂flux across 181 ecosystems. We find an increase in the annual CO₂sink across non-permafrost ecosystems but not permafrost ecosystems, despite similar increases in summer uptake. Thus, recent non-growing-season CO₂losses have substantially impacted the CO₂balance of permafrost ecosystems. Furthermore, analysis of interannual variability reveals warmer summers amplify the C cycle (increase productivity and respiration) at putatively nitrogen-limited sites and at sites less reliant on summer precipitation for water use. Our findings suggest that water and nutrient availability will be important predictors of the C-cycle response of these ecosystems to future warming. 

Abstract. Methane emissions from boreal and arctic wetlands, lakes, and rivers areexpected to increase in response to warming and associated permafrost thaw.However, the lack of appropriate land cover datasets for scalingfield-measured methane emissions to circumpolar scales has contributed to alarge uncertainty for our understanding of present-day and future methaneemissions. Here we present the Boreal–Arctic Wetland and Lake Dataset(BAWLD), a land cover dataset based on an expert assessment, extrapolatedusing random forest modelling from available spatial datasets of climate,topography, soils, permafrost conditions, vegetation, wetlands, and surfacewater extents and dynamics. In BAWLD, we estimate the fractional coverage offive wetland, seven lake, and three river classes within 0.5 × 0.5∘ grid cells that cover the northern boreal and tundra biomes(17 % of the global land surface). Land cover classes were defined usingcriteria that ensured distinct methane emissions among classes, as indicatedby a co-developed comprehensive dataset of methane flux observations. InBAWLD, wetlands occupied 3.2 × 106 km2 (14 % of domain)with a 95 % confidence interval between 2.8 and 3.8 × 106 km2. Bog, fen, and permafrost bog were the most abundant wetlandclasses, covering ∼ 28 % each of the total wetland area,while the highest-methane-emitting marsh and tundra wetland classes occupied5 % and 12 %, respectively. Lakes, defined to include all lentic open-waterecosystems regardless of size, covered 1.4 × 106 km2(6 % of domain). Low-methane-emitting large lakes (>10 km2) and glacial lakes jointly represented 78 % of the total lakearea, while high-emitting peatland and yedoma lakes covered 18 % and 4 %,respectively. Small (<0.1 km2) glacial, peatland, and yedomalakes combined covered 17 % of the total lake area but contributeddisproportionally to the overall spatial uncertainty in lake area with a95 % confidence interval between 0.15 and 0.38 × 106 km2. Rivers and streams were estimated to cover 0.12  × 106 km2 (0.5 % of domain), of which 8 % was associated withhigh-methane-emitting headwaters that drain organic-rich landscapes.Distinct combinations of spatially co-occurring wetland and lake classeswere identified across the BAWLD domain, allowing for the mapping of“wetscapes” that have characteristic methane emission magnitudes andsensitivities to climate change at regional scales. With BAWLD, we provide adataset which avoids double-accounting of wetland, lake, and river extentsand which includes confidence intervals for each land cover class. As such,BAWLD will be suitable for many hydrological and biogeochemical modellingand upscaling efforts for the northern boreal and arctic region, inparticular those aimed at improving assessments of current and futuremethane emissions. Data are freely available athttps://doi.org/10.18739/A2C824F9X (Olefeldt et al., 2021).