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Creators/Authors contains: "Howard, A"

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  1. Free, publicly-accessible full text available September 18, 2026
  2. The nucleolus is a multiphasic biomolecular condensate that facilitates ribosome biogenesis, a complex process involving hundreds of proteins and RNAs. The proper execution of ribosome biogenesis likely depends on the material properties of the nucleolus. However, these material properties remain poorly understood due to the challenges of in vivo measurements. Here, we use micropipette aspiration (MPA) to directly characterize the viscoelasticity and interfacial tensions of nucleoli within transcriptionally activeXenopus laevisoocytes. We examine the major nucleolar subphases, the outer granular component (GC) and the inner dense fibrillar component (DFC), which itself contains a third small phase known as the fibrillar center (FC). We show that the behavior of the GC is more liquid-like, while the behavior of the DFC/FC is consistent with that of a partially viscoelastic solid. To determine the role of ribosomal RNA in nucleolar material properties, we degrade RNA using RNase A, which causes the DFC/FC to become more fluid-like and alters interfacial tension. Together, our findings suggest that RNA underlies the partially solid-like properties of the DFC/FC and provide insights into how material properties of nucleoli in a near-native environment are related to their RNA-dependent function. 
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    Free, publicly-accessible full text available June 3, 2026
  3. Free, publicly-accessible full text available February 1, 2026
  4. Semiheavy water (HOD) is one of the simplest molecules in which the bonds are labeled by isotope. We demonstrate that a pair of intense few-femtosecond infrared laser pulses can be used to selectively tunnel ionize along one of the two bonds. The first pulse doubly ionizes HOD, inducing rapid bond stretching and unbending. Femtoseconds later, the second pulse arrives and further ionization is selectively enhanced along the OH bond. These conclusions arise from 3D time-resolved measurements of H + ,   D + , and O + momenta following triple ionization. Published by the American Physical Society2025 
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    Free, publicly-accessible full text available March 10, 2026
  5. Surface-attached cells can sense and respond to shear flow, but planktonic (free-swimming) cells are typically assumed to be oblivious to any flow that carries them. Here, we find that planktonic bacteria can transcriptionally respond to flow, inducing expression changes that are beneficial in flow. Specifically, we use microfluidic experiments and quantitative modeling to show that in the presence of flow, planktonicPseudomonas aeruginosainduce shear rate–dependent genes that promote growth in low-oxygen environments. Untangling this mechanism revealed that in flow, motileP. aeruginosaspatially redistribute, leading to cell density changes that activate quorum sensing, which in turn enhances the oxygen uptake rate. In diffusion-limited environments, including those commonly encountered by bacteria, flow-induced cell density gradients also independently generate oxygen gradients that alter gene expression. Mutants deficient in this flow-responsive mechanism exhibit decreased fitness in flow, suggesting that this dynamic coupling of biological and mechanical processes can be physiologically significant. 
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  6. In fiber spinning of photopolymers, surface tension limits the diameter of the fiber that can be produced due to the Rayleigh–Plateau instability. Submerging a pre-fiber jet in a miscible environment liberates the system from capillary effects, thus allowing the jet to be stretched into thin threads without instability. In this work, we systematically investigated a spinning method using miscible liquids, called jet-assisted wet spinning (JAWS), where stretching is achieved by a nearby submerged liquid jet. The diameter of the pre-fiber jet is a function of its flow rate and position relative to the assisting submerged liquid jet. A particular case where the main jet is modeled as the Landau–Squire jet is used to demonstrate the tracer-like thinning behavior of the pre-fiber jet. Experiments show that buoyancy has a significant impact on the pre-fiber jet diameter because of its influence on the entrainment trajectory. Overall, our results demonstrate the potential for the parallelization of JAWS for high-throughput fiber production. 
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    Free, publicly-accessible full text available December 9, 2025
  7. Rambow, Owen; Wanner, Leo; Apidianaki, Marianna; Al-Khalifa, Hend; Di_Eugenio, Barbara; Schockaert, Steven (Ed.)
    Human tutoring interventions play a crucial role in supporting student learning, improving academic performance, and promoting personal growth. This paper focuses on analyzing mathematics tutoring discourse using talk moves—a framework of dialogue acts grounded in Accountable Talk theory. However, scaling the collection, annotation, and analysis of extensive tutoring dialogues to develop machine learning models is a challenging and resource-intensive task. To address this, we present SAGA22, a compact dataset, and explore various modeling strategies, including dialogue context, speaker information, pretraining datasets, and further fine-tuning. By leveraging existing datasets and models designed for classroom teaching, our results demonstrate that supplementary pretraining on classroom data enhances model performance in tutoring settings, particularly when incorporating longer context and speaker information. Additionally, we conduct extensive ablation studies to underscore the challenges in talk move modeling. 
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    Free, publicly-accessible full text available January 19, 2026
  8. Rambow, Owen; Wanner, Owen; Apidianaki, Marianna; Al-Khalifa, Hend; Di_Eugenio, Barbara; Schockaert, Steven (Ed.)
    Human tutoring interventions play a crucial role in supporting student learning, improving academic performance, and promoting personal growth. This paper focuses on analyzing mathematics tutoring discourse using talk moves—a framework of dialogue acts grounded in Accountable Talk theory. However, scaling the collection, annotation, and analysis of extensive tutoring dialogues to develop machine learning models is a challenging and resource-intensive task. To address this, we present SAGA22, a compact dataset, and explore various modeling strategies, including dialogue context, speaker information, pretraining datasets, and further fine-tuning. By leveraging existing datasets and models designed for classroom teaching, our results demonstrate that supplementary pretraining on classroom data enhances model performance in tutoring settings, particularly when incorporating longer context and speaker information. Additionally, we conduct extensive ablation studies to underscore the challenges in talk move modeling. 
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    Free, publicly-accessible full text available January 19, 2026
  9. Free, publicly-accessible full text available January 6, 2026
  10. Thin-film equations are utilised in many different areas of fluid dynamics when there exists a direction in which the aspect ratio can be considered small. We consider thin free films with Marangoni effects in the extensional flow regime, where velocity gradients occur predominantly along the film. In practice, because of the local deposition of surfactants or input of energy, asymmetric distributions of surfactants or surface tension more generally, are possible. Such examples include the surface of bubbles and the rupture of thin films. In this study, we consider the asymmetric thin-film equations for extensional flow with Marangoni effects. Concentrating on the case of small Reynolds number$$ Re $$, we study the deposition of insoluble surfactants on one side of a liquid sheet otherwise at rest and the resulting thinning and rupture of the sheet. The analogous problem with a uniformly thinning liquid sheet is also considered. In addition, the centreline deformation is discussed. In particular, we show analytically that if the surface tension isotherm$$\sigma = \sigma (\varGamma )$$is nonlinear (surface tension$$\sigma$$varies with surfactant concentration$$\varGamma$$), then accounting for top–bottom asymmetry leads to slower (faster) thinning and pinching if$$\sigma = \sigma (\varGamma )$$is convex (concave). The analytical progress reported in this paper allows us to discuss the production of satellite drops from rupture via Marangoni effects, which, if relevant to surface bubbles, would be an aerosol production mechanism that is distinct from jet drops and film drops. 
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