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Creators/Authors contains: "Kraft, Nathan"

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  1. Free, publicly-accessible full text available February 1, 2026
  2. Neighborhood models have allowed us to test many hypotheses regarding the drivers of variation in tree growth, but require considerable computation due to the many empirically supported non-linear relationships they include. Regularized regression represents a far more efficient neighborhood modeling method, but it is unclear whether such an ecologically unrealistic model can provide accurate insights on tree growth. Rapid computation is becoming increasingly important as ecological datasets grow in size, and may be essential when using neighborhood models to predict tree growth beyond sample plots or into the future. We built a novel regularized regression model of tree growth and investigated whether it reached the same conclusions as a commonly used neighborhood model, regarding hypotheses of how tree growth is influenced by the species identity of neighboring trees. We also evaluated the ability of both models to interpolate the growth of trees not included in the model fitting dataset. Our regularized regression model replicated most of the classical model’s inferences in a fraction of the time without using high-performance computing resources. We found that both methods could interpolate out-of-sample tree growth, but the method making the most accurate predictions varied among focal species. Regularized regression is particularly efficient for comparing hypotheses because it automates the process of model selection and can handle correlated explanatory variables. This feature means that regularized regression could also be used to select among potential explanatory variables (e.g., climate variables) and thereby streamline the development of a classical neighborhood model. Both regularized regression and classical methods can interpolate out-of-sample tree growth, but future research must determine whether predictions can be extrapolated to trees experiencing novel conditions. Overall, we conclude that regularized regression methods can complement classical methods in the investigation of tree growth drivers and represent a valuable tool for advancing this field toward prediction. 
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  3. Abstract Current models of island biogeography treat endemic and non‐endemic species as if they were functionally equivalent, focussing primarily on species richness. Thus, the functional composition of island biotas in relation to island biogeographical variables remains largely unknown. Using plant trait data (plant height, leaf area and flower length) for 895 native species in the Canary Islands, we related functional trait distinctiveness and climate rarity for endemic and non‐endemic species and island ages. Endemics showed a link to climatically rare conditions that is consistent with island geological change through time. However, functional trait distinctiveness did not differ between endemics and non‐endemics and remained constant with island age. Thus, there is no obvious link between trait distinctiveness and occupancy of rare climates, at least for the traits measured here, suggesting that treating endemic and non‐endemic species as functionally equivalent in island biogeography is not fundamentally wrong. 
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  4. Abstract Turnover in species composition and the dominant functional strategies in plant communities across environmental gradients is a common pattern across biomes, and is often assumed to reflect shifts in trait optima. However, the extent to which community‐wide trait turnover patterns reflect changes in how plant traits affect the vital rates that ultimately determine fitness remain unclear.We tested whether shifts in the community‐weighted means of four key functional traits across an environmental gradient in a southern California grassland reflect variation in how these traits affect species' germination and fecundity across the landscape.We asked whether models that included trait–environment interactions help explain variation in two key vital rates (germination rates and fecundity), as well as an integrative measure of fitness incorporating both vital rates (the product of germination rate and fecundity). To do so, we planted seeds of 17 annual plant species at 16 sites in cleared patches with no competitors, and quantified the lifetime seed production of 1360 individuals. We also measured community composition and a variety of abiotic variables across the same sites. This allowed us to evaluate whether observed shifts in community‐weighted mean traits matched the direction of any trait–environment interactions detected in the plant performance experiment.We found that commonly measured plant functional traits do help explain variation in species responses to the environment—for example, high‐SLA species had a demographic advantage (higher germination rates and fecundity) in sites with high soil Ca:Mg levels, while low‐SLA species had an advantage in low Ca:Mg soils. We also found that shifts in community‐weighted mean traits often reflect the direction of these trait–environment interactions, though not all trait–environment relationships at the community level reflect changes in optimal trait values across these gradients.Synthesis. Our results show how shifts in trait–fitness relationships can give rise to turnover in plant phenotypes across environmental gradients, a fundamental pattern in ecology. We highlight the value of plant functional traits in predicting species responses to environmental variation, and emphasise the need for more widespread study of trait–performance relationships to improve predictions of community responses to global change. 
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  5. Abstract When species simultaneously compete with two or more species of competitor, higher‐order interactions (HOIs) can lead to emergent properties not present when species interact in isolated pairs. To extend ecological theory to multi‐competitor communities, ecologists must confront the challenges of measuring and interpreting HOIs in models of competition fit to data from nature. Such efforts are hindered by the fact that different studies use different definitions, and these definitions have unclear relationships to one another. Here, we propose a distinction between ‘soft’ HOIs, which identify possible interaction modification by competitors, and ‘hard’ HOIs, which identify interactions uniquely emerging in systems with three or more competitors. We show how these two classes of HOI differ in their motivation and interpretation, as well as the tests one uses to identify them in models fit to data. We then show how to operationalise this structure of definitions by analysing the results of a simulated competition experiment underlain by a consumer resource model. In the course of doing so, we clarify the challenges of interpreting HOIs in nature, and suggest a more precise framing of this research endeavour to catalyse further investigations. 
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  6. Quaternary climate change reduced and homogenized angiosperm tree diversity across large landscapes worldwide. 
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  7. Abstract Plant functional traits can predict community assembly and ecosystem functioning and are thus widely used in global models of vegetation dynamics and land–climate feedbacks. Still, we lack a global understanding of how land and climate affect plant traits. A previous global analysis of six traits observed two main axes of variation: (1) size variation at the organ and plant level and (2) leaf economics balancing leaf persistence against plant growth potential. The orthogonality of these two axes suggests they are differently influenced by environmental drivers. We find that these axes persist in a global dataset of 17 traits across more than 20,000 species. We find a dominant joint effect of climate and soil on trait variation. Additional independent climate effects are also observed across most traits, whereas independent soil effects are almost exclusively observed for economics traits. Variation in size traits correlates well with a latitudinal gradient related to water or energy limitation. In contrast, variation in economics traits is better explained by interactions of climate with soil fertility. These findings have the potential to improve our understanding of biodiversity patterns and our predictions of climate change impacts on biogeochemical cycles. 
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  8. Simova, Irena (Ed.)