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Cowen, Lenore (Ed.)Abstract Motivation Biclustering has emerged as a powerful approach to identifying functional patterns in complex biological data. However, existing tools are limited by their accuracy and efficiency to recognize various kinds of complex biclusters submerged in ever large datasets. We introduce a novel fast and highly accurate algorithm RecBic to identify various forms of complex biclusters in gene expression datasets. Results We designed RecBic to identify various trend-preserving biclusters, particularly, those with narrow shapes, i.e. clusters where the number of genes is larger than the number of conditions/samples. Given a gene expression matrix, RecBic starts with a column seed, andmore »
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A fundamental understanding of the flow of polymer solutions through the pore spaces of porous media is relevant and significant to enhanced oil recovery and groundwater remediation. We present in this work an experimental study of the fluid rheological effects on non-Newtonian flows in a simple laboratory model of the real-world pores—a rectangular sudden contraction–expansion microchannel. We test four different polymer solutions with varying rheological properties, including xanthan gum (XG), polyvinylpyrrolidone (PVP), polyethylene oxide (PEO), and polyacrylamide (PAA). We compare their flows against that of pure water at the Reynolds ( R e ) and Weissenburg ( W i )more »
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ABSTRACT The ATOMS, standing for ALMA Three-millimeter Observations of Massive Star-forming regions, survey has observed 146 active star-forming regions with ALMA band 3, aiming to systematically investigate the spatial distribution of various dense gas tracers in a large sample of Galactic massive clumps, to study the roles of stellar feedback in star formation, and to characterize filamentary structures inside massive clumps. In this work, the observations, data analysis, and example science of the ATOMS survey are presented, using a case study for the G9.62+0.19 complex. Toward this source, some transitions, commonly assumed to trace dense gas, including CS J = 2−1,more »