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Creators/Authors contains: "McClure, M"

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  1. Land use regulations have played a critical role in the siting and operation of renewable energy technologies. While there is a growing literature on the siting of wind and solar technologies, less is known about the relationship between local codes and planning decisions and the development of wood-based bioenergy technologies, particularly in rural places. This research examines the relationship between local land use policies and the siting and operation of different types of wood-based bioenergy technologies in northern Michigan, USA. Land use codes including zoning laws and ordinances related to wood-burning devices from 506 cities, townships, and villages within 36 counties in northern Michigan were combined with US Census data in a GIS database. ArcGIS was used to examine geographical differences between communities and socioeconomic factors related to different regulatory approaches. We found that areas with greater population densities and higher income and education levels tended to have more nuanced land use codes related to all scales of wood-burning, including residential wood heating, commercial-scale heating, and power generation. This paper emphasizes the importance of local decision-making and land use policies in shaping the development of wood-based energy technologies, and suggests the need for greater attention to rural community dynamics in planning the shift to a lower-carbon economy. 
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  2. A common goal in evolutionary biology is to discern the mechanisms that produce the astounding diversity of morphologies seen across the tree of life. Aposematic species, those with a conspicuous phenotype coupled with some form of defence, are excellent models to understand the link between vivid colour pattern variations, the natural selection shaping it, and the underlying genetic mechanisms underpinning this variation. Mimicry systems in which multiple species share the same conspicuous phenotype can provide an even better model for understanding the mechanisms of colour production in aposematic species, especially if comimics have divergent evolutionary histories. Here we investigate the genetic mechanisms by which vivid colour and pattern are produced in a Müllerian mimicry complex of poison frogs. We did this by first assembling a high-quality de novo genome assembly for the mimic poison frog Ranitomeya imitator. This assembled genome is 6.8 Gbp in size, with a contig N50 of 300 Kbp R. imitator and two colour morphs from both Ranitomeya fantastica and R. variabilis which R. imitator mimics. We identified a large number of pigmentation and patterning genes that are differentially expressed throughout development, many of them related to melanocyte development, melanin synthesis, iridophore development and guanine synthesis. Polytypic differences within species may be the result of differences in expression and/or timing of expression, whereas convergence for colour pattern between species does not appear to be due to the same changes in gene expression. In addition, we identify the pteridine synthesis pathway (including genes such as qdpr and xdh) as a key driver of the variation in colour between morphs of these species. Finally, we hypothesize that genes in the keratin family are important for producing different structural colours within these frogs. 
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  3. Abstract Aging, often considered a result of random cellular damage, can be accurately estimated using DNA methylation profiles, the foundation of pan-tissue epigenetic clocks. Here, we demonstrate the development of universal pan-mammalian clocks, using 11,754 methylation arrays from our Mammalian Methylation Consortium, which encompass 59 tissue types across 185 mammalian species. These predictive models estimate mammalian tissue age with high accuracy (r > 0.96). Age deviations correlate with human mortality risk, mouse somatotropic axis mutations and caloric restriction. We identified specific cytosines with methylation levels that change with age across numerous species. These sites, highly enriched in polycomb repressive complex 2-binding locations, are near genes implicated in mammalian development, cancer, obesity and longevity. Our findings offer new evidence suggesting that aging is evolutionarily conserved and intertwined with developmental processes across all mammals. 
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