skip to main content

Attention:

The NSF Public Access Repository (PAR) system and access will be unavailable from 11:00 PM ET on Friday, December 13 until 2:00 AM ET on Saturday, December 14 due to maintenance. We apologize for the inconvenience.


Search for: All records

Creators/Authors contains: "Soupir, Michelle"

Note: When clicking on a Digital Object Identifier (DOI) number, you will be taken to an external site maintained by the publisher. Some full text articles may not yet be available without a charge during the embargo (administrative interval).
What is a DOI Number?

Some links on this page may take you to non-federal websites. Their policies may differ from this site.

  1. Free, publicly-accessible full text available June 26, 2025
  2. Free, publicly-accessible full text available June 1, 2025
  3. Core Ideas A subsurface drainage‐fed bioreactor was retrofitted with a supplemental surface water pumping system. Design criteria of the pumping system are presented along with challenges and future recommendations. Pumped bioreactor systems show promise for the treatment of alternative nitrate‐laden sources of water. Pumped bioreactors have the potential to remove nitrate beyond the typical drainage season. 
    more » « less
  4. Antimicrobial resistance (AMR) can develop in deep-pit swine manure storage when bacteria are selectively pressured by unmetabolized antibiotics. Subsequent manure application on row crops is then a source of AMR into soil and downstream runoff water. Therefore, understanding the patterns of diverse antibiotic resistance genes (ARGs) in manure among different farms is important for both interpreting the results of the detection of these genes from previous studies and for the use of these genes as bioindicators of manure borne antibiotic resistance in the environment. Previous studies of manure-associated ARGs are based on limited samples of manures. To better understand the distribution of ARGs between manures, we characterized manures from 48 geographically independent swine farms across Iowa. The objectives of this study were to characterize the distribution of ARGs among these manures and to evaluate what factors in manure management may influence the presence of ARGs in manures. Our analysis included quantification of two commonly found ARGs in swine manure, ermB and tetM . Additionally, we characterized a broader suite of 31 ARGs which allowed for simultaneous assays of the presence or absence of multiple genes. We found the company integrator had a significant effect on both ermB ( P=0.0007 ) and tetM gene concentrations ( P=0.0425 ). Our broad analysis on ARG profiles found that the tet(36) gene was broadly present in swine manures, followed by the detection of tetT , tetM , erm(35) , ermF , ermB , str , aadD , and intl3 in samples from 14 farms. Finally, we provide a comparison of methods to detect ARGs in manures, specifically comparing conventional and high-throughput qPCR and discuss their role in ARG environmental monitoring efforts. Results of this study provide insight into commonalities of ARG presence in manure holding pits and provide supporting evidence that company integrator decisions may impact ARG concentrations. 
    more » « less
  5. The application of animal manures to cropland is an important nutrient recycling strategy in many parts of the world. Commonly, aggregated manure wastes contain chemical stressors including veterinary antimicrobials, heavy metals, and antimicrobial resistance genes (ARGs) that can stimulate the development and proliferation of antimicrobial resistance (AMR). While the presence of antimicrobials in manure is well-documented, the co-occurrence of other potentially impactful chemical stressors in swine manure remains underreported. This study quantifies and analyzes correlations between antimicrobials, metals, and certain ARGs present in manure samples from swine farms in Iowa, United States. Relationships between chemical stressors and different stages of swine production or feed composition are also investigated. Results revealed substantial levels of tetracyclines [up to 1,260 µg g −1 dry weight (d.w.) of manure for oxytetracycline] detected in all samples. Tiamulin, two ionophores (monensin and lasalocid), and one macrolide (tilmicosin) were detected at maximum class concentrations of 9.4, 0.547, and 0.472 µg g −1 d.w., respectively. The median relative abundances of ermB and tetM were 0.13 and 0.17 copies g −1 wet weight (w.w.) manure (normalized to 16S gene), respectively. Additionally, high levels of copper (Cu), iron (Fe), and zinc (Zn) were detected in all samples, with maximum concentrations of 887, 1,900, and 2,100 µg g −1 d.w., respectively. Notably, uranium (U) was detected in 11 samples, at concentrations up to 0.77 µg g −1 . A global analysis of AMR-stressor relationships using Spearman’s rank correlation indicates Cu, and Ba are the most positively and significantly correlated with cytotoxic anhydrotetracycline (ATC) and/or anhydrochlortetracycline (ACTC) concentrations in all tested facilities (Cu-ATC: ρ = 0.67, p = 0.0093; Cu-ACTC: ρ = 0.75, p = 0.0022; Ba-ATC: ρ = 0.84, p = 0.0002). Interestingly, ermB and tetM genes were strongly, positively correlated to each other ( ρ = 0.92, p < 0.0001), suggesting possible co-selection, despite the absence of correlation between ARGs and tetracycline concentrations. This study demonstrates the complexity of interactions between antimicrobials, metals, and ARGs in multiple manure storage pits prior to cropland application. 
    more » « less
  6. null (Ed.)
    The small Mediterranean country of Malta, an island located between Italy and North Africa, has been facing and will continue to face water stress and scarcity in the coming years, receiving the designation as the most water stressed country in Europe. In the past, Malta’s water challenges were centered around water quantity concerns, but in more recent years, the severity of their water stress has been strengthened by the deterioration of the groundwater quality and quantity. Through the over-extraction of their groundwater, saltwater intrusion has steadily occurred into their freshwater aquifer systems, worsening their groundwater quality for both domestic and agricultural purposes. The objective of this paper is to conduct an extensive review on the history of Malta’s water problems and how Malta is working to combat its water scarcity concerns. Additionally, this paper investigates the impact of Malta’s water scarcity on its food and energy security challenges. Our study concludes that while Malta has obstacles to overcome in their pursuit of water security and sustainable development, the future remains hopeful, with several alternatives still available. Some of the alternatives explored in this review include wastewater reuse, increased awareness, use of alternative energy sources, rainwater harvesting, and implementation of nation-wide strategic water policies. 
    more » « less
  7. null (Ed.)
    This paper summarizes the findings of an extensive review of literature that was conducted to understand the historical state of the food, energy, and water nexus in the Lake Atitlan basin and to recommend incentive-based, long-term sustainable policies to become a significant driver to Guatemala’s tourism industry and GDP growth. The SWAT (Soil and Water Assessment Tool) was implemented in the basin to work towards the goal of simulating nutrient loading. A key conclusion of this review study is for the local population to have advocacy for the “zero wastewater discharge to Lake Atitlan” initiative to bring long-term benefits to lake water quality. One of the recommended policy decisions is to seek external financing from international agencies like the World Bank at low-cost interest (IDA Loans) to implement waste management systems and pay this external debt by putting a small but affordable tax on tourists visiting the lake. Once a culture of zero municipal effluent discharge to Lake Atitlan is adopted by the local population, the livelihood of residents will become sustainable and the standard of living will increase because of improved water and air quality, making Lake Atitlan a haven of tourism for Guatemala and lifting its economy. 
    more » « less