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Accurately reconstructing original Total Organic Carbon (TOC) in thermally mature rocks is essential for the correct application of geochemical proxies and understanding organic carbon burial through time. To reconstruct original TOC using empirical methods, it is vital to have an accurate estimate of the original Hydrogen Index (HI). The two most common methods are estimating original HI using kerogen type or using average HI values from immature rocks elsewhere in the basin. This study tests the ability to use inorganic geochemical data to reconstruct original HI using the Upper Cretaceous-Paleogene Moreno Formation from the San Joaquin Basin, California, USA as a case study. The study utilized cores from the Moreno Formation that are thermally immature, thus preserving original HI values, and that span a range in initial HI. First, inorganic geochemical data were produced (elemental abundances and iron speciation) for samples previously analyzed for organic geochemistry. These data suggest that bottom water conditions during deposition of the Moreno Formation were ferruginous (anoxic and non-sulfidic), without development of sustained euxinia (anoxic and sulfidic). Next, a random forest machine learning analysis was implemented to analyze which inorganic geochemical variables best predict HI in the Moreno Formation. The most important proxies were those for detrital input (Ti, Th), marine export productivity (Cu, Ni), and redox proxies for suboxic conditions (Se, Cr, iron speciation). Finally, the random forest framework was used to predict HI values for three main study cores based on their inorganic geochemistry. These predictions were compared stratigraphically and statistically against the measured values and the kerogen type and average HI methods for reconstructing HI and show this new method has better predictive power than approaches based on single values. This indicates strong promise for using inorganic geochemistry, which is relatively immune to thermal maturation, to reconstruct organic geochemical parameters that are modified during burial and diagenetic process. 

Geochemical data from ancient marine sediments are crucial for studying palaeo-environments, palaeo-climates, and elemental cycles. With increased accessibility to geochemical data, many databases have emerged. However, there remains a need for a more comprehensive database that focuses on deep-time marine sediment records. Here, we introduce the Deep-Time Marine Sedimentary Element Database (DM-SED). The DM-SED has been built upon the Sedimentary Geochemistry and Paleoenvironments Project (SGP) database with a new compilation of 34 874 data entries from 433 studies, totalling 63 627 entries. The DM-SED contains 2 522 255 discrete marine sedimentary data points, including major and trace elements and some stable isotopes. It includes 9207 entries from the Precambrian and 54 420 entries from the Phanerozoic, thus providing significant references for reconstructing deep-time Earth system evolution. The data files described in this paper are available at https://doi.org/10.5281/zenodo.14771859 (Lai et al., 2025). 

It is clear from modern analogue studies that O2-deficient conditions favor preservation of organic matter (OM) in fine-grained sedimentary rocks (black shales). It is also clear that appreciable productivity and OM flux to the sediment are required to establish and maintain these conditions. However, debates regarding redox controls on OM accumulation in black shales have mainly focused on oxic versus anoxic conditions, and the implications of different anoxic redox states remain unexplored. Here, we present detailed multi-proxy sedimentary geochemical studies of major Paleozoic and Mesozoic North American black shale units to elucidate their depositional redox conditions. This is the first broad-scale study to use a consistent geochemical methodology and to incorporate data from Fe-speciation – presently the only redox proxy able to clearly distinguish anoxic depositional conditions as ferruginous (H2S-limited) or euxinic (H2S-replete, Fe-limited). These data are coupled with total organic carbon (TOC), programmed pyrolysis, and redox-sensitive trace element proxies, with almost all measurements analyzed using the same geochemical methodology. Consistent with expectations based on previous geochemical and paleontological/ichnological studies, these analyses demonstrate that the study units were almost exclusively deposited under anoxic bottom waters. These analyses also demonstrate that there is wide variance in the prevalence of euxinic versus ferruginous conditions, with many North American black shale units deposited under predominantly ferruginous or oscillatory conditions. TOC is significantly higher under euxinic bottom waters in analyses of both preserved (present day) TOC and reconstructed initial TOC values, although sediments deposited under both redox states do have economically viable TOC content. While this correlation does not reveal the mechanism behind higher organic enrichment in euxinic environments, which may be different in different basins, it does open new research avenues regarding resource exploration and the biogeochemistry of ancient reducing environments. 

The minimum O2 needed to fuel the demand of aquatic animals is commonly observed to increase with temperature, driven by accelerating metabolism. However, recent measurements of critical O2 thresholds (“Pcrit”) reveal more complex patterns, including those with a minimum at an intermediate thermal “optimum”. To discern the prevalence, physiological drivers, and biogeographic manifestations of such curves, we analyze new experimental and biogeographic data using a general dynamic model of aquatic water breathers. The model simulates the transfer of oxygen from ambient water through a boundary layer and into animal tissues driven by temperature-dependent rates of metabolism, diffusive gas exchange, and ventilatory and circulatory systems with O2-protein binding. We find that a thermal optimum in Pcrit can arise even when all physiological rates increase steadily with temperature. This occurs when O2 supply at low temperatures is limited by a process that is more temperature sensitive than metabolism, but becomes limited by a less sensitive process at warmer temperatures. Analysis of published species respiratory traits suggests that this scenario is not uncommon in marine biota, with ventilation and circulation limiting supply under cold conditions and diffusion limiting supply at high temperatures. Using occurrence data, we show that species with these physiological traits inhabit lowest O2 waters near the optimal temperature for hypoxia tolerance and are restricted to higher O2 at temperatures above and below this optimum. Our results imply that hypoxia tolerance can decline under both cold and warm conditions and thus may influence both poleward and equatorward species range limits. 

Abstract In an ocean that is rapidly warming and losing oxygen, accurate forecasting of species’ responses must consider how this environmental change affects fundamental aspects of their physiology. Here, we develop an absolute metabolic index (Φ A ) that quantifies how ocean temperature, dissolved oxygen and organismal mass interact to constrain the total oxygen budget an organism can use to fuel sustainable levels of aerobic metabolism. We calibrate species-specific parameters of Φ A with physiological measurements for red abalone ( Haliotis rufescens ) and purple urchin ( Strongylocentrotus purpuratus ). Φ A models highlight that the temperature where oxygen supply is greatest shifts cooler when water loses oxygen or organisms grow larger, providing a mechanistic explanation for observed thermal preference patterns. Viable habitat forecasts are disproportionally deleterious for red abalone, revealing how species-specific physiologies modulate the intensity of a common climate signal, captured in the newly developed Φ A framework. 

The evolution of oxygen cycles on Earth’s surface has been regulated by the balance between molecular oxygen production and consumption. The Neoproterozoic–Paleozoic transition likely marks the second rise in atmospheric and oceanic oxygen levels, widely attributed to enhanced burial of organic carbon. However, it remains disputed how marine organic carbon production and burial respond to global environmental changes and whether these feedbacks trigger global oxygenation during this interval. Here, we report a large lithium isotopic and elemental dataset from marine mudstones spanning the upper Neoproterozoic to middle Cambrian [~660 million years ago (Ma) to 500 Ma]. These data indicate a dramatic increase in continental clay formation after ~525 Ma, likely linked to secular changes in global climate and compositions of the continental crust. Using a global biogeochemical model, we suggest that intensified continental weathering and clay delivery to the oceans could have notably increased the burial efficiency of organic carbon and facilitated greater oxygen accumulation in the earliest Paleozoic oceans. 

The Ediacaran Gametrail Formation of northwestern Canada chronicles the evolution of a complex carbonate ramp system in response to fluctuations in relative sea level and regional tectonic subsidence alongside exceptional global change associated with the Shuram carbon isotope excursion (CIE). Here, we use extensive outcrop exposures of the Gametrail Formation in the Wernecke Mountains of Yukon, Canada, to construct a shelf-slope transect across the Shuram CIE. Twelve stratigraphic sections of the Gametrail Formation are combined with geological mapping and a suite of geochemical analyses to develop an integrated litho-, chemo-, and sequence stratigraphic model for these strata. In the more proximal Corn/Goz Creek region, the Gametrail Formation represents a storm-dominated inner to outer ramp depositional setting, while slope depositional environments in the Nadaleen River region are dominated by hemipelagic sedimentation, turbidites, and debris flows. The magnitude of the Shuram CIE is largest in slope limestones which underwent sediment-buffered diagenesis, while the CIE is notably smaller in the inner-outer ramp dolostones which experienced fluid-buffered diagenesis. Our regional mapping identified a distinct structural panel within the shelf-slope transect that was transported ~30 km via strike-slip motion during the Mesozoic–Cenozoic Cordilleran orogeny. One location in this transported structural block contains a stromatolite reef complex with extremely negative carbon isotope values down to ~ -30‰, while the other location contains an overthickened ooid shoal complex that does not preserve the characteristic negative CIE associated with the Shuram event. These deviations from the usual expression of the Shuram CIE along the shelf-slope transect in the Wernecke Mountains, and elsewhere globally, provide useful examples for how local tectonic, stratigraphic, and/or geochemical complexities can result in unusually large or completely absent expressions of a globally recognized CIE. 

Oxygen levels in the atmosphere and ocean have changed dramatically over Earth history, with major impacts on marine life. Because the early part of Earth’s history lacked both atmospheric oxygen and animals, a persistent co-evolutionary narrative has developed linking oxygen change with changes in animal diversity. Although it was long believed that oxygen rose to essentially modern levels around the Cambrian period, a more muted increase is now believed likely. Thus, if oxygen increase facilitated the Cambrian explosion, it did so by crossing critical ecological thresholds at low O2. Atmospheric oxygen likely remained at low or moderate levels through the early Paleozoic era, and this likely contributed to high metazoan extinction rates until oxygen finally rose to modern levels in the later Paleozoic. After this point, ocean deoxygenation (and marine mass extinctions) is increasingly linked to large igneous province eruptions—massive volcanic carbon inputs to the Earth system that caused global warming, ocean acidification, and oxygen loss. Although the timescales of these ancient events limit their utility as exact analogs for modern anthropogenic global change, the clear message from the geologic record is that large and rapid CO2 injections into the Earth system consistently cause the same deadly trio of stressors that are observed today. The next frontier in understanding the impact of oxygen changes (or, more broadly, temperature-dependent hypoxia) in deep time requires approaches from ecophysiology that will help conservation biologists better calibrate the response of the biosphere at large taxonomic, spatial, and temporal scales.