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Creators/Authors contains: "Wang, Di"

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  1. Free, publicly-accessible full text available May 19, 2026
  2. The concept that proteins are selected to fold into a well-defined native state has been effectively addressed within the framework of energy landscapes, underpinning the recent successes of structure prediction tools like AlphaFold. The amyloid fold, however, does not represent a unique minimum for a given single sequence. While the cross-βhydrogen-bonding pattern is common to all amyloids, other aspects of amyloid fiber structures are sensitive not only to the sequence of the aggregating peptides but also to the experimental conditions. This polymorphic nature of amyloid structures challenges structure predictions. In this paper, we use AI to explore the landscape of possible amyloid protofilament structures composed of a single stack of peptides aligned in a parallel, in-register manner. This perspective enables a practical method for predicting protofilament structures of arbitrary sequences: RibbonFold. RibbonFold is adapted from AlphaFold2, incorporating parallel in-register constraints within AlphaFold2’s template module, along with an appropriate polymorphism loss function to address the structural diversity of folds. RibbonFold outperforms AlphaFold2/3 on independent test sets, achieving a mean TM-score of 0.5. RibbonFold proves well-suited to study the polymorphic landscapes of widely studied sequences with documented polymorphisms. The resulting landscapes capture these observed polymorphisms effectively. We show that while well-known amyloid-forming sequences exhibit a limited number of plausible polymorphs on their “solubility” landscape, randomly shuffled sequences with the same composition appear to be negatively selected in terms of their relative solubility. RibbonFold is a valuable framework for structurally characterizing amyloid polymorphism landscapes. 
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    Free, publicly-accessible full text available April 22, 2026
  3. Piyawattanametha, Wibool; Park, Yong-Hwa; Zappe, Hans (Ed.)
    Free, publicly-accessible full text available March 19, 2026
  4. Free, publicly-accessible full text available December 1, 2025
  5. Abstract Over the past decade, topological insulators have received enormous attention for their potential in energy‐efficient spin‐to‐charge conversion, enabled by strong spin‐orbit coupling and spin‐momentum locked surface states. Despite extensive research, the spin‐to‐charge conversion efficiency, usually characterized by the spin Hall angle (θSH), remains relatively low at room temperature. In this work, pulsed laser deposition is employed to fabricate high‐quality ternary topological insulator (Bi0.1Sb0.9)2Te3thin films on magnetic insulator Y3Fe5O12. It is found that the value ofθSHreaches ≈0.76 at room temperature and increases to ≈0.9 as the Fermi level is tuned to cross topological surface states via electrical gating. These findings provide an innovative approach to tailoring the spin‐to‐charge conversion in topological insulators and pave the way for their applications in energy‐efficient spintronic devices. 
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    Free, publicly-accessible full text available March 3, 2026
  6. Free, publicly-accessible full text available September 1, 2025
  7. Colloidal quantum dots, with their size-tunable optoelectronic properties and scalable synthesis, enable applications in which inexpensive high-performance semiconductors are needed. Synthesis science breakthroughs have been key to the realization of quantum dot technologies, but important group III–group V semiconductors, including colloidal gallium arsenide (GaAs), still cannot be synthesized with existing approaches. The high-temperature molten salt colloidal synthesis introduced in this work enables the preparation of previously intractable colloidal materials. We directly nucleated and grew colloidal quantum dots in molten inorganic salts by harnessing molten salt redox chemistry and using surfactant additives for nanocrystal shape control. Synthesis temperatures above 425°C are critical for realizing photoluminescent GaAs quantum dots, which emphasizes the importance of high temperatures enabled by molten salt solvents. We generalize the methodology and demonstrate nearly a dozen III-V solid-solution nanocrystal compositions that have not been previously reported. 
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    Free, publicly-accessible full text available October 25, 2025