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The evolution of oxygen cycles on Earth’s surface has been regulated by the balance between molecular oxygen production and consumption. The Neoproterozoic–Paleozoic transition likely marks the second rise in atmospheric and oceanic oxygen levels, widely attributed to enhanced burial of organic carbon. However, it remains disputed how marine organic carbon production and burial respond to global environmental changes and whether these feedbacks trigger global oxygenation during this interval. Here, we report a large lithium isotopic and elemental dataset from marine mudstones spanning the upper Neoproterozoic to middle Cambrian [~660 million years ago (Ma) to 500 Ma]. These data indicate a dramatic increase in continental clay formation after ~525 Ma, likely linked to secular changes in global climate and compositions of the continental crust. Using a global biogeochemical model, we suggest that intensified continental weathering and clay delivery to the oceans could have notably increased the burial efficiency of organic carbon and facilitated greater oxygen accumulation in the earliest Paleozoic oceans. 

We propose a circuit-level backdoor attack, QTrojan, against Quantum Neural Networks (QNNs) in this paper. QTrojan is implemented by a few quantum gates inserted into the variational quantum circuit of the victim QNN. QTrojan is much stealthier than a prior Data-Poisoning-based Backdoor Attack (DPBA) since it does not embed any trigger in the inputs of the victim QNN or require access to original training datasets. Compared to a DPBA, QTrojan improves the clean data accuracy by 21% and the attack success rate by 19.9%. 

The widespread use of machine learning is changing our daily lives. Unfortunately, clients are often concerned about the privacy of their data when using machine learning-based applications. To address these concerns, the development of privacy-preserving machine learning (PPML) is essential. One promising approach is the use of fully homomorphic encryption (FHE) based PPML, which enables services to be performed on encrypted data without decryption. Although the speed of computationally expensive FHE operations can be significantly boosted by prior ASIC-based FHE accelerators, the performance of key-switching, the dominate primitive in various FHE operations, is seriously limited by their small bit-width datapaths and frequent matrix transpositions. In this paper, we present an electro-optical (EO) PPML accelerator, PriML, to accelerate FHE operations. Its 512-bit datapath supporting 510-bit residues greatly reduces the key-switching cost. We also create an in-scratchpad-memory transpose unit to fast transpose matrices. Compared to prior PPML accelerators, on average, PriML reduces the latency of various machine learning applications by > 94.4% and the energy consumption by > 95%. 

Predicting protein localization and understanding its mechanisms are critical in biology and pathology. In this context, we propose a new web application of MULocDeep with improved performance, result interpretation, and visualization. By transferring the original model into species-specific models, MULocDeep achieved competitive prediction performance at the subcellular level against other state-of-the-art methods. It uniquely provides a comprehensive localization prediction at the suborganellar level. Besides prediction, our web service quantifies the contribution of single amino acids to localization for individual proteins; for a group of proteins, common motifs or potential targeting-related regions can be derived. Furthermore, the visualizations of targeting mechanism analyses can be downloaded for publication-ready figures. The MULocDeep web service is available at https://www.mu-loc.org/.

 

Fully Homomorphic Encryption over the Torus (TFHE) allows arbitrary computations to happen directly on ciphertexts using homomorphic logic gates. However, each TFHE gate on state-of-the-art hardware platforms such as GPUs and FPGAs is extremely slow (> 0.2ms). Moreover, even the latest FPGA-based TFHE accelerator cannot achieve high energy efficiency, since it frequently invokes expensive double-precision floating point FFT and IFFT kernels. In this paper, we propose a fast and energy-efficient accelerator, MATCHA, to process TFHE gates. MATCHA supports aggressive bootstrapping key unrolling to accelerate TFHE gates without decryption errors by approximate multiplication-less integer FFTs and IFFTs, and a pipelined datapath. Compared to prior accelerators, MATCHA improves the TFHE gate processing throughput by 2.3x, and the throughput per Watt by 6.3x. 

Transdermal drug delivery provides convenient and pain-free self-administration for personalized therapy. However, challenges remain in treating acute diseases mainly due to their inability to timely administrate therapeutics and precisely regulate pharmacokinetics within a short time window. Here we report the development of active acoustic metamaterials-driven transdermal drug delivery for rapid and on-demand acute disease management. Through the integration of active acoustic metamaterials, a compact therapeutic patch is integrated for penetration of skin stratum corneum and active percutaneous transport of therapeutics with precise control of dose and rate over time. Moreover, the patch device quantitatively regulates the dosage and release kinetics of therapeutics and achieves better delivery performance in vivo than through subcutaneous injection. As a proof-of-concept application, we show our method can reverse life-threatening acute allergic reactions in a female mouse model of anaphylaxis via a multi-burst delivery of epinephrine, showing better efficacy than a fixed dosage injection of epinephrine, which is the current gold standard ‘self-injectable epinephrine’ strategy. This innovative method may provide a promising means to manage acute disease for personalized medicine.

 

Ultra-fast & low-power superconductor single-flux-quantum (SFQ)-based CNN systolic accelerators are built to enhance the CNN inference throughput. However, shift-register (SHIFT)-based scratchpad memory (SPM) arrays prevent a SFQ CNN accelerator from exceeding 40% of its peak throughput, due to the lack of random access capability. This paper first documents our study of a variety of cryogenic memory technologies, including Vortex Transition Memory (VTM), Josephson-CMOS SRAM, MRAM, and Superconducting Nanowire Memory, during which we found that none of the aforementioned technologies made a SFQ CNN accelerator achieve high throughput, small area, and low power simultaneously. Second, we present a heterogeneous SPM architecture, SMART, composed of SHIFT arrays and a random access array to improve the inference throughput of a SFQ CNN systolic accelerator. Third, we propose a fast, low-power and dense pipelined random access CMOS-SFQ array by building SFQ passive-transmission-line-based H-Trees that connect CMOS sub-banks. Finally, we create an ILP-based compiler to deploy CNN models on SMART. Experimental results show that, with the same chip area overhead, compared to the latest SHIFT-based SFQ CNN accelerator, SMART improves the inference throughput by 3.9 × (2.2 ×), and reduces the inference energy by 86% (71%) when inferring a single image (a batch of images). 

Genomics is the foundation of precision medicine, global food security and virus surveillance. Exact-match is one of the most essential operations widely used in almost every step of genomics such as alignment, assembly, annotation, and compression. Modern genomics adopts Ferragina-Manzini Index (FMIndex) augmenting space-efficient Burrows-Wheeler transform (BWT) with additional data structures to permit ultra-fast exact-match operations. However, FM-Index is notorious for its poor spatial locality and random memory access pattern. Prior works create GPU-, FPGA-, ASIC- and even process-in-memory (PIM)based accelerators to boost FM-Index search throughput. Though they achieve the state-of-the-art FM-Index search throughput, the same as all prior conventional accelerators, FM-Index PIMs process only one DNA symbol after each DRAM row activation, thereby suffering from poor memory bandwidth utilization. In this paper, we propose a hardware accelerator, EXMA, to enhance FM-Index search throughput. We first create a novel EXMA table with a multi-task-learning (MTL)-based index to process multiple DNA symbols with each DRAM row activation. We then build an accelerator to search over an EXMA table. We propose 2-stage scheduling to increase the cache hit rate of our accelerator. We introduce dynamic page policy to improve the row buffer hit rate of DRAM main memory. We also present CHAIN compression to reduce the data structure size of EXMA tables. Compared to state-of-the-art FM-Index PIMs, EXMA improves search throughput by 4.9 ×, and enhances search throughput per Watt by 4.8×. 

Homomorphic encryption (HE) and garbled circuit (GC) provide the protection for users’ privacy. However, simply mixing the HE and GC in RNN models suffer from long inference latency due to slow activation functions. In this paper, we present a novel hybrid structure of HE and GC gated recurrent unit (GRU) network, , for low-latency secure inferences. replaces computationally expensive GC-based tanh with fast GC-based ReLU, and then quantizes sigmoid and ReLU to smaller bit-length to accelerate activations in a GRU. We evaluate with multiple GRU models trained on 4 public datasets. Experimental results show achieves top-notch accuracy and improves the secure inference latency by up to 138× over one of the state-of-the-art secure networks on the Penn Treebank dataset.