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  1. Abstract

    Diatoms are among the most abundant phytoplankton that inhabit coastal ecosystems, forming large blooms that fuel coastal food webs. Although diatoms are often large and morphologically distinct, many are small or morphologically cryptic making it difficult to understand the temporal dynamics of whole diatom communities and the environmental factors that drive them. Here, we investigated diatom diversity and its environmental correlates using 6 yr of monthly surface water samples from the Narragansett Bay Plankton Time Series to investigate the seasonal and annual variability of diatom species occurrence. High‐throughput amplicon sequencing of filtered biomass yielded 658 diatom amplicon sequence variants (ASVs), of which 347 were identified to species. Of the 49 diatom genera in the sequencing dataset, 33% had never been observed in the time series using microscopy (1959–2014). We observed a weak quadratic relationship between ASV richness and chlorophyll‐aconcentrations, suggesting that richness decreases during blooms. There was a significant difference in diatom ASV richness by season and we identified distinct assemblages associated with different seasons. These assemblages were remarkably synchronous, exhibiting a sinewave‐like pattern, over 6 yr with an annual periodicity that correlated significantly with seasonal changes in temperature, light, and dissolved inorganic nitrogen. The annual cycle of diatom assemblages suggests stability in a key component of the estuarine food web known to influence ecosystem resilience and function. Deviations from the annual cycle of recurrence could be used to distinguish between changes in community structure driven by annual fluctuations in the environment and those driven by climate‐change stressors.

     
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  2. Abstract

    Hourly, year‐round flow cytometry has made it possible to relate seasonal environmental variability to the population dynamics of the smallest, most abundant phytoplankton on the Northeast US Shelf. To evaluate whether the insights from these data extend toSynechococcusfarther from shore, we analyze flow cytometry measurements made continuously from the underway systems on 21 cruises traveling between the Martha's Vineyard Coastal Observatory (MVCO) and the continental shelf break. We describe how seasonal patterns inSynechococcus, which have been documented in detail at MVCO, occur across the region with subtle variation. We find that the underlying relationship between temperature and division rate is consistent across the shelf and can explain much of the observed spatial variability in concentration. Connecting individual cell properties to annual and regional patterns in environmental conditions, these results demonstrate the value of autonomous monitoring and create an improved picture of picophytoplankton dynamics within an economically important ecosystem.

     
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  3. abstract

    The marine coastal region makes up just 10% of the total area of the global ocean but contributes nearly 20% of its total primary production and over 80% of fisheries landings. Unicellular phytoplankton dominate primary production. Climate variability has had impacts on various marine ecosystems, but most sites are just approaching the age at which ecological responses to longer term, unidirectional climate trends might be distinguished. All five marine pelagic sites in the US Long Term Ecological Research (LTER) network are experiencing warming trends in surface air temperature. The marine physical system is responding at all sites with increasing mixed layer temperatures and decreasing depth and with declining sea ice cover at the two polar sites. Their ecological responses are more varied. Some sites show multiple population or ecosystem changes, whereas, at others, changes have not been detected, either because more time is needed or because they are not being measured.

     
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  4. Abstract

    Northern sand lance (Ammodytes dubius) are among the most critically important forage fish throughout the Northeast US shelf. Despite their ecological importance, little is known about the larval transport of this species. Here, we use otolith microstructure analysis to estimate hatch and settlement dates of sand lance and then use these measurements to parametrize particle tracking experiments to assess the source–sink dynamics of three prominent sand lance habitats in the Gulf of Maine: Stellwagen Bank, the Great South Channel, and Georges Bank. Our results indicate the pelagic larval duration of northern sand lance lasts about 2 months (range: 50–84 days) and exhibit a broad range of hatch and settlement dates. Forward and backward particle tracking experiments show substantial interannual variability, yet suggest transport generally follows the north to south circulation in the Gulf of Maine region. We find that Stellwagen Bank is a major source of larvae for the Great South Channel, while the Great South Channel primarily serves as a sink for larvae from Stellwagen Bank and Georges Bank. Retention is likely the primary source of larvae on Georges Bank. Retention within both Georges Bank and Stellwagen Bank varies interannually in response to changes in local wind events, while the Great South Channel only exhibited notable retention in a single year. Collectively, these results provide a framework to assess population connectivity among these sand lance habitats, which informs the species' recruitment dynamics and impacts its vulnerability to exploitation.

     
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  5. Abstract

    The Mid‐Atlantic Bight (MAB) hosts a large and productive marine ecosystem supported by high phytoplankton concentrations. Enhanced surface chlorophyll concentrations at the MAB shelf‐break front have been detected in synoptic measurements, yet this feature is not present in seasonal means. To understand why, we assess the conditions associated with enhanced surface chlorophyll at the shelf break. We employ in‐situ and remote sensing data, and a 2‐dimensional model to show that Ekman restratification driven by upfront winds drives ephemerally enhanced chlorophyll concentrations at the shelf‐break front in spring. Using 8‐day composite satellite‐measured surface chlorophyll concentration data from 2003–2020, we constructed a daily running mean (DRM) climatology of the cross‐shelf chlorophyll distribution for the northern MAB region. While the frontal enhancement of chlorophyll is apparent in the DRM climatology, it is not captured in the seasonal climatology due to its short duration of less than a week. In‐situ measurements of the frontal chlorophyll enhancement reveal that chlorophyll is highest in spring when the shelf‐break front slumps offshore from its steep wintertime position causing restratification in the upper part of the water column. Several restratification mechanisms are possible, but the first day of enhanced chlorophyll at the shelf break corresponds to increasing upfront winds, suggesting that the frontal restratification is driven by offshore Ekman transport of the shelf water over the denser slope water. The 2‐dimensional model shows that upfront winds can indeed drive Ekman restratification and alleviate light limitation of phytoplankton growth at the shelf‐break front.

     
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  6. Summary

    Marine microbes often show a high degree of physiological or ecological diversity below the species level. This microdiversity raises questions about the processes that drive diversification and permit coexistence of diverse yet closely related marine microbes, especially given the theoretical efficiency of competitive exclusion. Here, we provide insight with an 8‐year time series of diversity withinSynechococcus, a widespread and important marine picophytoplankter. The population ofSynechococcuson the Northeast U.S. Shelf is comprised of six main types, each of which displays a distinct and consistent seasonal pattern. With compositional data analysis, we show that these patterns can be reproduced with a simple model that couples differential responses to temperature and light with the seasonal cycle of the physical environment. These observations support the hypothesis that temporal variability in environmental factors can maintain microdiversity in marine microbial populations. We also identify how seasonal diversity patterns directly determine overarchingSynechococcuspopulation abundance features.

     
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  7. Abstract

    Plankton imaging systems supported by automated classification and analysis have improved ecologists' ability to observe aquatic ecosystems. Today, we are on the cusp of reliably tracking plankton populations with a suite of lab‐based and in situ tools, collecting imaging data at unprecedentedly fine spatial and temporal scales. But these data have potential well beyond examining the abundances of different taxa; the individual images themselves contain a wealth of information on functional traits. Here, we outline traits that could be measured from image data, suggest machine learning and computer vision approaches to extract functional trait information from the images, and discuss promising avenues for novel studies. The approaches we discuss are data agnostic and are broadly applicable to imagery of other aquatic or terrestrial organisms.

     
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  8. Abstract

    Influences of the ocean mixed layer (OML) dynamics on intensity, pathway, and landfall of October 2012 Hurricane Sandy were examined through an experiment using the Weather Research and Forecasting (WRF) model. The WRF model was run for two cases with or without coupling to the OML. The OML in the WRF was calculated by an oceanic mixed layer submodel. The initial conditions of the depth and mean water temperature of the OML were specified using Global‐FVCOM and Global‐HYCOM fields. The comparison results between these two cases clearly show that including the OML dynamics enhanced the contribution of vertical mixing to the air‐sea heat flux. When the hurricane moved toward the coast, the local OML rapidly deepened with an increase of storm wind. Intense vertical mixing brought cold water in the deep ocean toward the surface to produce a cold wake underneath the storm, with the lowest sea temperature at the maximum wind zone. This process led to a significant latent heat loss from the ocean within the storm and hence rapid drops of the air temperature and vapor mixing ratio above the sea surface. As a result, the storm was intensified as the central sea level pressure dropped. Improving air pressure simulation with OML tended to reduce the storm size and strengthened the storm intensity and hence provided a better simulation of hurricane pathway and landfall.

     
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  9. Abstract

    Herbivorous consumption of primary production is a key transformation in global biogeochemical cycles, directing matter and energy either to higher trophic levels, export production, or remineralization. Grazing by microzooplankton is often poorly constrained, particularly in dynamic coastal systems. Temperate coastal areas are seasonally and spatially variable, which presents both challenges and opportunities to identify patterns and drivers of grazing pressure. Here we report on two winter and one summer week‐long cruises (2018–2019), as part of the new Northeast U.S. Shelf Long‐Term Ecological Research program. During both seasons, coastal waters were colder and fresher, and had higher phytoplankton biomass than waters at the shelf break. The phytoplankton community was dominated by large cells in winter and by small cells in summer. Phytoplankton growth rates ranged from < 0.5 d−1in winter and up to 1.4 d−1in summer and were strongly correlated to temperature, to light availability, and to phytoplankton community size‐structure. Grazing rates were not correlated with total chlorophyll a, which points to other biological drivers, including species composition in predator‐prey interactions at the first trophic level. The percentage of primary production consumed (%PP) indicated higher trophic transfer in winter (%PP > 50%) than during summer (%PP < 20%), highlighting seasonal shifts in planktonic food web structure and function. These results imply that predictable shifts in environmental conditions can be linked to ecosystem shifts in net primary production. Hierarchies of variability, from localized to interannual and long‐term climate driven, can be understood within the context of sustained measurements of ecosystem properties and function.

     
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  10. Abstract

    Synechococcusis a widespread and important marine primary producer. Time series provide critical information for identifying and understanding the factors that determine abundance patterns. Here, we present the results of analysis of a 16‐yr hourly time series ofSynechococcusat the Martha's Vineyard Coastal Observatory, obtained with an automated, in situ flow cytometer. We focus on understanding seasonal abundance patterns by examining relationships between cell division rate, loss rate, cellular properties (e.g., cell volume, phycoerythrin fluorescence), and environmental variables (e.g., temperature, light). We find that the drivers of cell division vary with season; cells are temperature‐limited in winter and spring, but light‐limited in the fall. Losses to the population also vary with season. Our results lead to testable hypotheses aboutSynechococcusecophysiology and a working framework for understanding the seasonal controls ofSynechococcuscell abundance in a temperate coastal system.

     
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