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  1. Abstract

    A chalcogen atom Y contains two separate σ‐holes when in a R1YR2molecular bonding pattern. Quantum chemical calculations consider competition between these two σ‐holes to engage in a chalcogen bond (ChB) with a NH3base. R groups considered include F, Br, I, and tert‐butyl (tBu). Also examined is the situation where the Y lies within a chalcogenazole ring, where its neighbors are C and N. Both electron‐withdrawing substituents R1and R2act cooperatively to deepen the two σ‐holes, but the deeper of the two holes consistently lies opposite to the more electron‐withdrawing group, and is also favored to form a stronger ChB. The formation of two simultaneous ChBs in a triad requires the Y atom to act as double electron acceptor, and so anti‐cooperativity weakens each bond relative to the simple dyad. This effect is such that some of the shallower σ‐holes are unable to form a ChB at all when a base occupies the other site.

     
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  2. Abstract

    The PnF2(Pn=P,As,Sb,Bi) on a naphthalene scaffold can engage in an internal pnicogen Pn⋅⋅⋅N bond (PnB) with an NH2group placed close to it on the adjoining ring. An approaching neutral NH3molecule can engage in a second PnB with the central Pn, which tends to weaken the intramolecular bond. The presence of the latter in turn weakens the intermolecular PnB with respect to that formed in its absence. Replacement of the external NH3by a CNanion causes a fundamental change in the bonding pattern, producing a fourth covalent bond with Pn, which rearranges into a trigonal bipyramidal motif. This addition disrupts the internal Pn⋅⋅⋅N pnicogen bond, recasting the PnF2⋅⋅⋅NH2interaction into an NH⋅⋅⋅F H‐bond.

     
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  3. Abstract

    The crystal structure of a newly synthesized compound, [PbL(Ac)]2, (where L=2 (amino(pyrazin‐2‐yl) methylene) hydrazinecarbothioamide, Ac=acetate anion) exhibits a close contact between pairs of Pb atoms, suggesting a ditetrel bond, in addition to two Pb⋅⋅⋅O tetrel bonds, and two C−H⋅⋅⋅O H‐bonds. The presence of this ditetrel bond as an attractive component is confirmed by various quantum chemical methods. This novelty of this particular bond is its existence even in the absence of a σ‐hole on the Pb atom, which is typically considered a prerequisite for a bond of this type. From a wider perspective, a survey of the Cambridge Structural Database suggests this bond may be more common than was hitherto thought, with 44 examples of Pb⋅⋅⋅Pb contacts amongst a total number of 219 examples of T⋅⋅⋅T interactions in general (T=Si, Ge, Sn, Pb).

     
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  4. Abstract

    The effects on the C−I⋅⋅N halogen bond between iodobenzene and NH3of placing various substituents on the phenyl ring are monitored by quantum calculations. Substituents R=N(CH3)2, NH2, CH3, OCH3, COCH3, Cl, F, COH, CN, and NO2were each placed ortho, meta, and para to the I. The depth of the σ‐hole on I is deepened as R becomes more electron‐withdrawing which is reflected in a strengthening of the halogen bond, which varied between 3.3 and 5.5 kcal mol−1. In most cases, the ortho placement yields the largest perturbation, followed by meta and then para, but this trend is not universal. Parallel to these substituent effects is a progressive lengthening of the covalent C−I bond. Formation of the halogen bond reduces the NMR chemical shielding of all three nuclei directly involved in the C−I⋅⋅N interaction. The deshielding of the electron donor N is most closely correlated with the strength of the bond, as is the coupling constant between I and N, so both have potential use as spectroscopic measures of halogen bond strength.

     
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  5. Abstract

    The T⋅⋅⋅N tetrel bond (TB) formed between TX3OH (T=C, Si, Ge; X=H, F) and the Lewis base N≡CM (M=H, Li, Na) is studied by ab initio calculations at the MP2/aug‐cc‐pVTZ level. Complexes involving TH3OH contain a conventional TB with interaction energy less than 10 kcal/mol. This bond is substantially strengthened, approaching 35 kcal/mol and covalent character, when fluorosubstituted TF3OH is combined with NCLi or NCNa. Along with this enhanced binding comes a near equalization of the TB T⋅⋅⋅N and the internal T−O bond lengths, and the associated structure acquires a trigonal bipyramidal shape, despite a high internal deformation energy. This structural transformation becomes more complete, and the TB is further strengthened upon adding an electron acceptor BeCl2to the Lewis acid and a base to the NCM unit. This same TB strengthening can be accomplished also by imposition of an external electric field.

     
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  6. Abstract

    Crystal structures document the ability of a TF3group (T=Si, Ge, Sn, Pb) situated on a naphthalene system to engage in an intramolecular tetrel bond (TB) with an amino group on the adjoining ring.Ab initiocalculations evaluate the strength of this bond and evaluate whether it can influence the ability of the T atom to engage in a second, intermolecular TB with another nucleophile. A very strong CNanionic base can approach the T either along the extension of a T−C or T−F bond and form a strong TB with an interaction energy approaching 100 kcal/mol, although this bond is weakened a bit by the presence of the internal T⋅⋅⋅N bond. The much less potent NCH base engages in a correspondingly longer and weaker TB, less than 10 kcal/mol. Such an intermolecular TB is weakened by the presence of the internal TB, to the point that it only occurs for the two heavier tetrel atoms Sn and Pb.

     
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  7. Abstract

    The replacement of a CH group of benzene by a triel (Tr) atom places a positive region of electrostatic potential near the Tr atom in the plane of the aromatic ring. This σ‐hole can interact with an X lone pair of XCCH (X=F, Cl, Br, and I) to form a triel bond (TrB). The interaction energy between C5H5Tr and FCCH lies in the range between 2.2 and 4.4 kcal/mol, in the order Tr=B+cation above the ring pulls density toward itself and thus magnifies the Tr σ‐hole. The TrB to the XCCH nucleophile is thereby magnified as is the strength of the TrB. This positive cooperativity is particularly large for Tr=B.

     
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  8. Abstract

    The ability of B atoms on two different molecules to engage with one another in a noncovalent diboron bond is studied by ab initio calculations. Due to electron donation from its substituents, the trivalent B atom of BYZ2(Z=CO, N2, and CNH; Y=H and F) has the ability to in turn donate charge to the B of a BX3molecule (X=H, F, and CH3), thus forming a B⋅⋅⋅B diboron bond. These bonds are of two different strengths and character. BH(CO)2and BH(CNH)2, and their fluorosubstituted analogues BF(CO)2and BF(CNH)2, engage in a typical noncovalent bond with B(CH3)3and BF3, with interaction energies in the 3–8 kcal/mol range. Certain other combinations result in a much stronger diboron bond, in the 26–44 kcal/mol range, and with a high degree of covalent character. Bonds of this type occur when BH3is added to BH(CO)2, BH(CNH)2, BH(N2)2, and BF(CO)2, or in the complexes of BH(N2)2with B(CH3)3and BF3. The weaker noncovalent bonds are held together by roughly equal electrostatic and dispersion components, complemented by smaller polarization energy, while polarization is primarily responsible for the stronger ones.

     
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  9. Free, publicly-accessible full text available June 1, 2024
  10. Type I and II halogen bonds are well-recognized motifs that commonly occur within crystals. Quantum calculations are applied to examine whether such geometries might occur in their closely related chalcogen bond cousins. Homodimers are constructed of the R1R2C=Y and R1R2Y monomers, wherein Y represents a chalcogen atom, S, Se, or Te; R1 and R2 refer to either H or F. A Type II (T2) geometry wherein the lone pair of one Y is closely aligned with a σ-hole of its partner represents a stable arrangement for all except YH2, although not all such structures are true minima. The symmetric T1 geometry in which each Y atom serves as both electron donor and acceptor in the chalcogen bond is slightly higher in energy for R1R2C=Y, but the reverse is true for R1R2Y. Due to their deeper σ-holes, the latter molecules engage in stronger chalcogen bonds than do the former, with the exception of H2Y, whose dimers are barely bound. The interaction energies rise as the Y atom grows larger: S < Se < Te. 
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    Free, publicly-accessible full text available May 1, 2024