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Abstract In this paper, we explore the benefits that digitalization and Big Data analytics can bring to animal health, emphasizing the need to advance toward precision veterinary epidemiology. This concept takes advantage of multilevel animal health–related data to better understand disease dynamics in a population and design more cost-effective interventions, particularly focusing on livestock health. However, to translate this concept into practice, critical advancements and changes are needed in how we collect, standardize, integrate, share, and use data. Fostering interdisciplinary teams that integrate epidemiologists, veterinarians, and other domain experts with computer scientists, engineers, and data scientists is essential to implement this approach and better address complex animal health issues. 

eXplainable Artificial Intelligence (XAI) has garnered significant attention for enhancing transparency and trust in machine learning models. However, the scopes of most existing explanation techniques focus either on offering a holistic view of the explainee model (global explanation) or on individual instances (local explanation), while the middle ground, i.e., cohort-based explanation, is less explored. Cohort explanations offer insights into the explainee's behavior on a specific group or cohort of instances, enabling a deeper understanding of model decisions within a defined context. In this paper, we discuss the unique challenges and opportunities associated with measuring cohort explanations, define their desired properties, and create a generalized framework for generating cohort explanations based on supervised clustering. 

Path-specific effect analysis is a powerful tool in causal inference. This paper provides a definition of causal counterfactual path-specific importance score for the structural causal model (SCM). Different from existing path-specific effect definitions, which focus on the population level, the score defined in this paper can quantify the impact of a decision variable on an outcome variable along a specific pathway at the individual level. Moreover, the score has many desirable properties, including following the chain rule and being consistent. Finally, this paper presents an algorithm that can leverage these properties and find the k-most important paths with the highest importance scores in a causal graph effectively. 

Antimicrobial resistance (AMR) is arguably one of the major health and economic challenges in our society. A key aspect of tackling AMR is rapid and accurate detection of the emergence and spread of AMR in food animal production, which requires routine AMR surveillance. However, AMR detection can be expensive and time-consuming considering the growth rate of the bacteria and the most commonly used analytical procedures, such as Minimum Inhibitory Concentration (MIC) testing. To mitigate this issue, we utilized machine learning to predict the future AMR burden of bacterial pathogens. We collected pathogen and antimicrobial data from >600 farms in the United States from 2010 to 2021 to generate AMR time series data. Our prediction focused on five bacterial pathogens (Escherichia coli, Streptococcus suis, Salmonella sp., Pasteurella multocida, andBordetella bronchiseptica). We found that Seasonal Auto-Regressive Integrated Moving Average (SARIMA) outperformed five baselines, including Auto-Regressive Moving Average (ARMA) and Auto-Regressive Integrated Moving Average (ARIMA). We hope this study provides valuable tools to predict the AMR burden not only of the pathogens assessed in this study but also of other bacterial pathogens.