Search for: All records

Path-specific effect analysis is a powerful tool in causal inference. This paper provides a definition of causal counterfactual path-specific importance score for the structural causal model (SCM). Different from existing path-specific effect definitions, which focus on the population level, the score defined in this paper can quantify the impact of a decision variable on an outcome variable along a specific pathway at the individual level. Moreover, the score has many desirable properties, including following the chain rule and being consistent. Finally, this paper presents an algorithm that can leverage these properties and find the k-most important paths with the highest importance scores in a causal graph effectively.

 

Antimicrobial resistance (AMR) is arguably one of the major health and economic challenges in our society. A key aspect of tackling AMR is rapid and accurate detection of the emergence and spread of AMR in food animal production, which requires routine AMR surveillance. However, AMR detection can be expensive and time-consuming considering the growth rate of the bacteria and the most commonly used analytical procedures, such as Minimum Inhibitory Concentration (MIC) testing. To mitigate this issue, we utilized machine learning to predict the future AMR burden of bacterial pathogens. We collected pathogen and antimicrobial data from >600 farms in the United States from 2010 to 2021 to generate AMR time series data. Our prediction focused on five bacterial pathogens (Escherichia coli, Streptococcus suis, Salmonella sp., Pasteurella multocida, andBordetella bronchiseptica). We found that Seasonal Auto-Regressive Integrated Moving Average (SARIMA) outperformed five baselines, including Auto-Regressive Moving Average (ARMA) and Auto-Regressive Integrated Moving Average (ARIMA). We hope this study provides valuable tools to predict the AMR burden not only of the pathogens assessed in this study but also of other bacterial pathogens.

 

Unsupervised domain adaptation is critical to many real-world applications where label information is unavailable in the target domain. In general, without further assumptions, the joint distribution of the features and the label is not identifiable in the target domain. To address this issue, we rely on a property of minimal changes of causal mechanisms across domains to minimize unnecessary influences of domain shift. To encode this property, we first formulate the data generating process using a latent variable model with two partitioned latent subspaces: invariant components whose distributions stay the same across domains, and sparse changing components that vary across domains. We further constrain the domain shift to have a restrictive influence on the changing components. Under mild conditions, we show that the latent variables are partially identifiable, from which it follows that the joint distribution of data and labels in the target domain is also identifiable. Given the theoretical insights, we propose a practical domain adaptation framework, called iMSDA. Extensive experimental results reveal that iMSDA outperforms state-of-the-art domain adaptation algorithms on benchmark datasets, demonstrating the effectiveness of our framework.