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1. PROGRESSIVE DAMAGE ANALYSIS OF STEEL-REINFORCED CONCRETE BEAMS USING HIGHER-ORDER 1D FINITE ELEMENTS

   https://doi.org/10.1615/IntJMultCompEng.2022045649  

   Nagaraj, Manish H. ; Maiaru, M. ( January 2023 , International Journal for Multiscale Computational Engineering)

   The present work investigates progressive damage in steel-reinforced concrete structures. An elastic-perfectly plastic material response is considered for the reinforcing steel constituent, while the smeared-crack approach is applied to model the nonlinear behavior of concrete. The analysis employs one-dimensional numerical models based on higher-order finite elements derived using the Carrera unified formulation (CUF). A set of numerical assessments is presented to study the mechanical response of a steel-reinforced notched concrete beam loaded in tension. The predictions are found to be in very good agreement with reference experimental observations, thereby validating the numerical approach. It is shown that CUF allows for the explicit representation of the constituents within the composite beam, resulting in accurate solutions in a computationally efficient manner. 

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2. Left Ventricular Geometry, Tissue Composition, and Residual Stress in High Fat Diet Dahl-Salt Sensitive Rats.

   https://doi.org/https://doi.org/10.1007/s11340-020-00664-8  

   Grobbel, M. R. ; Lee, L. C. ; Watts, S. W. ; Fink, G. D. ; Roccabianca, S. ( January 2021 , Experimental mechanics)

   null (Ed.)

   Background Hypertension drives myocardial remodeling, leading to changes in structure, composition and mechanical behavior, including residual stress, which are linked to heart disease progression in a gender-specific manner. Emerging therapies are also targeting constituent-specific pathological features. All previous studies, however, have characterized remodeling in the intact tissue, rather than isolated tissue constituents, and did not include sex as a biological variable. Objective In this study we first identified the contribution of collagen fiber network and myocytes to the myocardial residual stress/strain in Dahl-Salt sensitive rats fed with high fat diet. Then, we quantified the effect of hypertension on the remodeling of the left ventricle (LV), as well as the existence of sex-specific remodeling features. Methods We performed mechanical tests (opening angle, ring-test) and histological analysis on isolated constituents and intact tissue of the LV. Based on the measurements from the tests, we performed a stress analysis to evaluate the residual stress distribution. Statistical analysis was performed to identify the effects of constituent isolation, elevated blood pressure, and sex of the animal on the experimental measurements and modeling results. Results Hypertension leads to reduced residual stress/strain in the intact tissue, isolated collagen fibers, and isolated myocytes in male and female rats. Collagen remains the largest contributor to myocardial residual stress in both normotensive and hypertensive animals. We identified sex-differences in both hypertensive and normotensive animals. Conclusions We observed both constituent- and sex-specific remodeling features in the LV of an animal model of hypertension. 

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3. Synchronization of Alternative Models in a Supermodel and the Learning of Critical Behavior

   https://doi.org/10.1175/JAS-D-22-0113.1  

   Duane, Gregory S. ; Shen, Mao-Lin ( June 2023 , Journal of the Atmospheric Sciences)

   “Supermodeling” climate by allowing different models to assimilate data from one another in run time has been shown to give results superior to those of any one model and superior to any weighted average of model outputs. The only free parameters, connection strengths between corresponding variables in each pair of models, are determined using some form of machine learning. It is demonstrated that supermodeling succeeds because near critical states, interscale interactions are important but unresolved processes cannot be effectively represented diagnostically in any single parameterization scheme. In two examples, a pair of toy quasigeostrophic (QG) channel models of the midlatitudes and a pair of ECHAM5 models of the tropical Pacific atmosphere with a common ocean, supermodels dynamically combine parameterization schemes so as to capture criticality, associated critical structures, and the supporting scale interactions. The QG supermodeling scheme extends a previous configuration in which two such models synchronize with intermodel connections only between medium-scale components of the flow; here the connections are trained against a third “real” model. Intermittent blocking patterns characterize the critical behavior thus obtained, even where such patterns are missing in the constituent models. In the ECHAM-based climate supermodel, the corresponding critical structure is the single ITCZ pattern, a pattern that occurs in neither of the constituent models. For supermodels of both types, power spectra indicate enhanced interscale interactions in frequency or energy ranges of physical interest, in agreement with observed data, and supporting a generalized form of the self-organized criticality hypothesis.

   In a “supermodel” of Earth’s climate, alternative models (climate simulations), which differ in the way they represent processes on the smallest scales, are trained to exchange information as they run, adjusting to one another much as weather prediction models adjust to new observations. They form a consensus, capturing atmospheric behaviors that have eluded all the separate models. We demonstrate that simplified supermodels succeed, where no single approach can, by correctly representingcritical phenomenainvolving sudden qualitative transitions, such as occur in El Niño events, that depend on interactions among atmospheric processes on many different scales in space and time. The correct reproduction of critical phenomena is vital both for predicting weather and for projecting the effects of climate change.

    

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4. The eWaterCycle platform for open and FAIR hydrological collaboration

   https://doi.org/10.5194/gmd-15-5371-2022  

   Hut, Rolf ; Drost, Niels ; van de Giesen, Nick ; van Werkhoven, Ben ; Abdollahi, Banafsheh ; Aerts, Jerom ; Albers, Thomas ; Alidoost, Fakhereh ; Andela, Bouwe ; Camphuijsen, Jaro ; et al ( January 2022 , Geoscientific Model Development)

   Abstract. Hutton et al. (2016) argued that computational hydrology can only be a proper science if the hydrological community makes sure that hydrological model studies are executed and presented in a reproducible manner. Hut, Drost and van de Giesen replied that to achieve this hydrologists should not “re-invent the water wheel” but rather use existing technology from other fields (such as containers and ESMValTool) and open interfaces (such as the Basic Model Interface, BMI) to do their computational science (Hut et al., 2017). With this paper and the associated release of the eWaterCycle platform and software package (available on Zenodo: https://doi.org/10.5281/zenodo.5119389, Verhoeven et al., 2022), we are putting our money where our mouth is and providing the hydrological community with a “FAIR by design” (FAIR meaning findable, accessible, interoperable, and reproducible) platform to do science. The eWaterCycle platform separates the experiments done on the model from the model code. In eWaterCycle, hydrological models are accessed through a common interface (BMI) in Python and run inside of software containers. In this way all models are accessed in a similar manner facilitating easy switching of models, model comparison and model coupling. Currently the following models and model suites are available through eWaterCycle: PCR-GLOBWB 2.0, wflow, Hype, LISFLOOD, MARRMoT, and WALRUS While these models are written in different programming languages they can all be run and interacted with from the Jupyter notebook environment within eWaterCycle. Furthermore, the pre-processing of input data for these models has been streamlined by making use of ESMValTool. Forcing for the models available in eWaterCycle from well-known datasets such as ERA5 can be generated with a single line of code. To illustrate the type of research that eWaterCycle facilitates, this paper includes five case studies: from a simple “hello world” where only a hydrograph is generated to a complex coupling of models in different languages. In this paper we stipulate the design choices made in building eWaterCycle and provide all the technical details to understand and work with the platform. For system administrators who want to install eWaterCycle on their infrastructure we offer a separate installation guide. For computational hydrologists that want to work with eWaterCycle we also provide a video explaining the platform from a user point of view (https://youtu.be/eE75dtIJ1lk, last access: 28 June 2022)​​​​​​​. With the eWaterCycle platform we are providing the hydrological community with a platform to conduct their research that is fully compatible with the principles of both Open Science and FAIR science. 

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5. Florida mangrove saltmarsh reference surface soils

   https://doi.org/10.6073/pasta/0e08cbe07c84488cb7b9dd16669946d0  

   Lewis, David Bruce ( January 2021 , Environmental Data Initiative)

   Site description. This data package consists of data obtained from sampling surface soil (the 0-7.6 cm depth profile) in black mangrove (Avicennia germinans) dominated forest and black needlerush (Juncus roemerianus) saltmarsh along the Gulf of Mexico coastline in peninsular west-central Florida, USA. This location has a subtropical climate with mean daily temperatures ranging from 15.4 °C in January to 27.8 °C in August, and annual precipitation of 1336 mm. Precipitation falls as rain primarily between June and September. Tides are semi-diurnal, with 0.57 m median amplitudes during the year preceding sampling (U.S. NOAA National Ocean Service, Clearwater Beach, Florida, station 8726724). Sea-level rise is 4.0 ± 0.6 mm per year (1973-2020 trend, mean ± 95 % confidence interval, NOAA NOS Clearwater Beach station). The A. germinans mangrove zone is either adjacent to water or fringed on the seaward side by a narrow band of red mangrove (Rhizophora mangle). A near-monoculture of J. roemerianus is often adjacent to and immediately landward of the A. germinans zone. The transition from the mangrove to the J. roemerianus zone is variable in our study area. An abrupt edge between closed-canopy mangrove and J. roemerianus monoculture may extend for up to several hundred meters in some locations, while other stretches of ecotone present a gradual transition where smaller, widely spaced trees are interspersed into the herbaceous marsh. Juncus roemerianus then extends landward to a high marsh patchwork of succulent halophytes (including Salicornia bigellovi, Sesuvium sp., and Batis maritima), scattered dwarf mangrove, and salt pans, followed in turn by upland vegetation that includes Pinus sp. and Serenoa repens. Field design and sample collection. We established three study sites spaced at approximately 5 km intervals along the western coastline of the central Florida peninsula. The sites consisted of the Salt Springs (28.3298°, -82.7274°), Energy Marine Center (28.2903°, -82.7278°), and Green Key (28.2530°, -82.7496°) sites on the Gulf of Mexico coastline in Pasco County, Florida, USA. At each site, we established three plot pairs, each consisting of one saltmarsh plot and one mangrove plot. Plots were 50 m^2 in size. Plots pairs within a site were separated by 230-1070 m, and the mangrove and saltmarsh plots composing a pair were 70-170 m apart. All plot pairs consisted of directly adjacent patches of mangrove forest and J. roemerianus saltmarsh, with the mangrove forests exhibiting a closed canopy and a tree architecture (height 4-6 m, crown width 1.5-3 m). Mangrove plots were located at approximately the midpoint between the seaward edge (water-mangrove interface) and landward edge (mangrove-marsh interface) of the mangrove zone. Saltmarsh plots were located 20-25 m away from any mangrove trees and into the J. roemerianus zone (i.e., landward from the mangrove-marsh interface). Plot pairs were coarsely similar in geomorphic setting, as all were located on the Gulf of Mexico coastline, rather than within major sheltering formations like Tampa Bay, and all plot pairs fit the tide-dominated domain of the Woodroffe classification (Woodroffe, 2002, "Coasts: Form, Process and Evolution", Cambridge University Press), given their conspicuous semi-diurnal tides. There was nevertheless some geomorphic variation, as some plot pairs were directly open to the Gulf of Mexico while others sat behind keys and spits or along small tidal creeks. Our use of a plot-pair approach is intended to control for this geomorphic variation. Plot center elevations (cm above mean sea level, NAVD 88) were estimated by overlaying the plot locations determined with a global positioning system (Garmin GPS 60, Olathe, KS, USA) on a LiDAR-derived bare-earth digital elevation model (Dewberry, Inc., 2019). The digital elevation model had a vertical accuracy of ± 10 cm (95 % CI) and a horizontal accuracy of ± 116 cm (95 % CI). Soil samples were collected via coring at low tide in June 2011. From each plot, we collected a composite soil sample consisting of three discrete 5.1 cm diameter soil cores taken at equidistant points to 7.6 cm depth. Cores were taken by tapping a sleeve into the soil until its top was flush with the soil surface, sliding a hand under the core, and lifting it up. Cores were then capped and transferred on ice to our laboratory at the University of South Florida (Tampa, Florida, USA), where they were combined in plastic zipper bags, and homogenized by hand into plot-level composite samples on the day they were collected. A damp soil subsample was immediately taken from each composite sample to initiate 1 y incubations for determination of active C and N (see below). The remainder of each composite sample was then placed in a drying oven (60 °C) for 1 week with frequent mixing of the soil to prevent aggregation and liberate water. Organic wetland soils are sometimes dried at 70 °C, however high drying temperatures can volatilize non-water liquids and oxidize and decompose organic matter, so 50 °C is also a common drying temperature for organic soils (Gardner 1986, "Methods of Soil Analysis: Part 1", Soil Science Society of America); we accordingly chose 60 °C as a compromise between sufficient water removal and avoidance of non-water mass loss. Bulk density was determined as soil dry mass per core volume (adding back the dry mass equivalent of the damp subsample removed prior to drying). Dried subsamples were obtained for determination of soil organic matter (SOM), mineral texture composition, and extractable and total carbon (C) and nitrogen (N) within the following week. Sample analyses. A dried subsample was apportioned from each composite sample to determine SOM as mass loss on ignition at 550 °C for 4 h. After organic matter was removed from soil via ignition, mineral particle size composition was determined using a combination of wet sieving and density separation in 49 mM (3 %) sodium hexametaphosphate ((NaPO_3)_6) following procedures in Kettler et al. (2001, Soil Science Society of America Journal 65, 849-852). The percentage of dry soil mass composed of silt and clay particles (hereafter, fines) was calculated as the mass lost from dispersed mineral soil after sieving (0.053 mm mesh sieve). Fines could have been slightly underestimated if any clay particles were burned off during the preceding ignition of soil. An additional subsample was taken from each composite sample to determine extractable N and organic C concentrations via 0.5 M potassium sulfate (K_2SO_4) extractions. We combined soil and extractant (ratio of 1 g dry soil:5 mL extractant) in plastic bottles, reciprocally shook the slurry for 1 h at 120 rpm, and then gravity filtered it through Fisher G6 (1.6 μm pore size) glass fiber filters, followed by colorimetric detection of nitrite (NO_2^-) + nitrate (NO_3^-) and ammonium (NH_4^+) in the filtrate (Hood Nowotny et al., 2010,Soil Science Society of America Journal 74, 1018-1027) using a microplate spectrophotometer (Biotek Epoch, Winooski, VT, USA). Filtrate was also analyzed for dissolved organic C (referred to hereafter as extractable organic C) and total dissolved N via combustion and oxidation followed by detection of the evolved CO_2 and N oxide gases on a Formacs HT TOC/TN analyzer (Skalar, Breda, The Netherlands). Extractable organic N was then computed as total dissolved N in filtrate minus extractable mineral N (itself the sum of extractable NH_4-N and NO_2-N + NO_3-N). We determined soil total C and N from dried, milled subsamples subjected to elemental analysis (ECS 4010, Costech, Inc., Valencia, CA, USA) at the University of South Florida Stable Isotope Laboratory. Median concentration of inorganic C in unvegetated surface soil at our sites is 0.5 % of soil mass (Anderson, 2019, Univ. of South Florida M.S. thesis via methods in Wang et al., 2011, Environmental Monitoring and Assessment 174, 241-257). Inorganic C concentrations are likely even lower in our samples from under vegetation, where organic matter would dilute the contribution of inorganic C to soil mass. Nevertheless, the presence of a small inorganic C pool in our soils may be counted in the total C values we report. Extractable organic C is necessarily of organic C origin given the method (sparging with HCl) used in detection. Active C and N represent the fractions of organic C and N that are mineralizable by soil microorganisms under aerobic conditions in long-term soil incubations. To quantify active C and N, 60 g of field-moist soil were apportioned from each composite sample, placed in a filtration apparatus, and incubated in the dark at 25 °C and field capacity moisture for 365 d (as in Lewis et al., 2014, Ecosphere 5, art59). Moisture levels were maintained by frequently weighing incubated soil and wetting them up to target mass. Daily CO_2 flux was quantified on 29 occasions at 0.5-3 week intervals during the incubation period (with shorter intervals earlier in the incubation), and these per day flux rates were integrated over the 365 d period to compute an estimate of active C. Observations of per day flux were made by sealing samples overnight in airtight chambers fitted with septa and quantifying headspace CO_2 accumulation by injecting headspace samples (obtained through the septa via needle and syringe) into an infrared gas analyzer (PP Systems EGM 4, Amesbury, MA, USA). To estimate active N, each incubated sample was leached with a C and N free, 35 psu solution containing micronutrients (Nadelhoffer, 1990, Soil Science Society of America Journal 54, 411-415) on 19 occasions at increasing 1-6 week intervals during the 365 d incubation, and then extracted in 0.5 M K_2SO_4 at the end of the incubation in order to remove any residual mineral N. Active N was then quantified as the total mass of mineral N leached and extracted. Mineral N in leached and extracted solutions was detected as NH_4-N and NO_2-N + NO_3-N via colorimetry as above. This incubation technique precludes new C and N inputs and persistently leaches mineral N, forcing microorganisms to meet demand by mineralizing existing pools, and thereby directly assays the potential activity of soil organic C and N pools present at the time of soil sampling. Because this analysis commences with disrupting soil physical structure, it is biased toward higher estimates of active fractions. Calculations. Non-mobile C and N fractions were computed as total C and N concentrations minus the extractable and active fractions of each element. This data package reports surface-soil constituents (moisture, fines, SOM, and C and N pools and fractions) in both gravimetric units (mass constituent / mass soil) and areal units (mass constituent / soil surface area integrated through 7.6 cm soil depth, the depth of sampling). Areal concentrations were computed as X × D × 7.6, where X is the gravimetric concentration of a soil constituent, D is soil bulk density (g dry soil / cm^3), and 7.6 is the sampling depth in cm. 

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