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1. The Deep Learning Epilepsy Detection Challenge: Design, Implementation, and Test of a New Crowd-Sourced AI Challenge Ecosystem

   Kiral, Isabell ; Roy, Subhrajit ; Mummert, Todd ; Braz, Alan ; Tsay, Jason ; Tang, Jianbin ; Asif, Umar ; Schaffter, Thomas ; Mehmet, Eren ; Picone, Joseph ; et al ( April 2019 , Challenges in Machine Learning Competitions for All (CiML))

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   The DeepLearningEpilepsyDetectionChallenge: design, implementation, andtestofanewcrowd-sourced AIchallengeecosystem Isabell Kiral*, Subhrajit Roy*, Todd Mummert*, Alan Braz*, Jason Tsay, Jianbin Tang, Umar Asif, Thomas Schaffter, Eren Mehmet, The IBM Epilepsy Consortium◊ , Joseph Picone, Iyad Obeid, Bruno De Assis Marques, Stefan Maetschke, Rania Khalaf†, Michal Rosen-Zvi† , Gustavo Stolovitzky† , Mahtab Mirmomeni† , Stefan Harrer† * These authors contributed equally to this work † Corresponding authors: rkhalaf@us.ibm.com, rosen@il.ibm.com, gustavo@us.ibm.com, mahtabm@au1.ibm.com, sharrer@au.ibm.com ◊ Members of the IBM Epilepsy Consortium are listed in the Acknowledgements section J. Picone and I. Obeid are with Temple University, USA. T. Schaffter is with Sage Bionetworks, USA. E. Mehmet is with the University of Illinois at Urbana-Champaign, USA. All other authors are with IBM Research in USA, Israel and Australia. Introduction This decade has seen an ever-growing number of scientific fields benefitting from the advances in machine learning technology and tooling. More recently, this trend reached the medical domain, with applications reaching from cancer diagnosis [1] to the development of brain-machine-interfaces [2]. While Kaggle has pioneered the crowd-sourcing of machine learning challenges to incentivise data scientists from around the world to advance algorithm and model design, the increasing complexity of problem statements demands of participants to be expert data scientists, deeply knowledgeable in at least one other scientific domain, and competent software engineers with access to large compute resources. People who match this description are few and far between, unfortunately leading to a shrinking pool of possible participants and a loss of experts dedicating their time to solving important problems. Participation is even further restricted in the context of any challenge run on confidential use cases or with sensitive data. Recently, we designed and ran a deep learning challenge to crowd-source the development of an automated labelling system for brain recordings, aiming to advance epilepsy research. A focus of this challenge, run internally in IBM, was the development of a platform that lowers the barrier of entry and therefore mitigates the risk of excluding interested parties from participating. The challenge: enabling wide participation With the goal to run a challenge that mobilises the largest possible pool of participants from IBM (global), we designed a use case around previous work in epileptic seizure prediction [3]. In this “Deep Learning Epilepsy Detection Challenge”, participants were asked to develop an automatic labelling system to reduce the time a clinician would need to diagnose patients with epilepsy. Labelled training and blind validation data for the challenge were generously provided by Temple University Hospital (TUH) [4]. TUH also devised a novel scoring metric for the detection of seizures that was used as basis for algorithm evaluation [5]. In order to provide an experience with a low barrier of entry, we designed a generalisable challenge platform under the following principles: 1. No participant should need to have in-depth knowledge of the specific domain. (i.e. no participant should need to be a neuroscientist or epileptologist.) 2. No participant should need to be an expert data scientist. 3. No participant should need more than basic programming knowledge. (i.e. no participant should need to learn how to process fringe data formats and stream data efficiently.) 4. No participant should need to provide their own computing resources. In addition to the above, our platform should further • guide participants through the entire process from sign-up to model submission, • facilitate collaboration, and • provide instant feedback to the participants through data visualisation and intermediate online leaderboards. The platform The architecture of the platform that was designed and developed is shown in Figure 1. The entire system consists of a number of interacting components. (1) A web portal serves as the entry point to challenge participation, providing challenge information, such as timelines and challenge rules, and scientific background. The portal also facilitated the formation of teams and provided participants with an intermediate leaderboard of submitted results and a final leaderboard at the end of the challenge. (2) IBM Watson Studio [6] is the umbrella term for a number of services offered by IBM. Upon creation of a user account through the web portal, an IBM Watson Studio account was automatically created for each participant that allowed users access to IBM's Data Science Experience (DSX), the analytics engine Watson Machine Learning (WML), and IBM's Cloud Object Storage (COS) [7], all of which will be described in more detail in further sections. (3) The user interface and starter kit were hosted on IBM's Data Science Experience platform (DSX) and formed the main component for designing and testing models during the challenge. DSX allows for real-time collaboration on shared notebooks between team members. A starter kit in the form of a Python notebook, supporting the popular deep learning libraries TensorFLow [8] and PyTorch [9], was provided to all teams to guide them through the challenge process. Upon instantiation, the starter kit loaded necessary python libraries and custom functions for the invisible integration with COS and WML. In dedicated spots in the notebook, participants could write custom pre-processing code, machine learning models, and post-processing algorithms. The starter kit provided instant feedback about participants' custom routines through data visualisations. Using the notebook only, teams were able to run the code on WML, making use of a compute cluster of IBM's resources. The starter kit also enabled submission of the final code to a data storage to which only the challenge team had access. (4) Watson Machine Learning provided access to shared compute resources (GPUs). Code was bundled up automatically in the starter kit and deployed to and run on WML. WML in turn had access to shared storage from which it requested recorded data and to which it stored the participant's code and trained models. (5) IBM's Cloud Object Storage held the data for this challenge. Using the starter kit, participants could investigate their results as well as data samples in order to better design custom algorithms. (6) Utility Functions were loaded into the starter kit at instantiation. This set of functions included code to pre-process data into a more common format, to optimise streaming through the use of the NutsFlow and NutsML libraries [10], and to provide seamless access to the all IBM services used. Not captured in the diagram is the final code evaluation, which was conducted in an automated way as soon as code was submitted though the starter kit, minimising the burden on the challenge organising team. Figure 1: High-level architecture of the challenge platform Measuring success The competitive phase of the "Deep Learning Epilepsy Detection Challenge" ran for 6 months. Twenty-five teams, with a total number of 87 scientists and software engineers from 14 global locations participated. All participants made use of the starter kit we provided and ran algorithms on IBM's infrastructure WML. Seven teams persisted until the end of the challenge and submitted final solutions. The best performing solutions reached seizure detection performances which allow to reduce hundred-fold the time eliptologists need to annotate continuous EEG recordings. Thus, we expect the developed algorithms to aid in the diagnosis of epilepsy by significantly shortening manual labelling time. Detailed results are currently in preparation for publication. Equally important to solving the scientific challenge, however, was to understand whether we managed to encourage participation from non-expert data scientists. Figure 2: Primary occupation as reported by challenge participants Out of the 40 participants for whom we have occupational information, 23 reported Data Science or AI as their main job description, 11 reported being a Software Engineer, and 2 people had expertise in Neuroscience. Figure 2 shows that participants had a variety of specialisations, including some that are in no way related to data science, software engineering, or neuroscience. No participant had deep knowledge and experience in data science, software engineering and neuroscience. Conclusion Given the growing complexity of data science problems and increasing dataset sizes, in order to solve these problems, it is imperative to enable collaboration between people with differences in expertise with a focus on inclusiveness and having a low barrier of entry. We designed, implemented, and tested a challenge platform to address exactly this. Using our platform, we ran a deep-learning challenge for epileptic seizure detection. 87 IBM employees from several business units including but not limited to IBM Research with a variety of skills, including sales and design, participated in this highly technical challenge. 

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2. Use Defines Possibilities: Reasoning about Object Function to Interpret and Execute Robot Instructions

   Shichman, Mollie ; Bonial, Claire ; Blodgett, Austin ; Hudson, Taylor ; Ferraro, Francis ; Rudinger, Rachel ( June 2023 , 15th International Conference on Computational Semantics (IWCS))

   Language models have shown great promise in common-sense related tasks. However, it remains unseen how they would perform in the context of physically situated human-robot interactions, particularly in disaster-relief scenarios. In this paper, we develop a language model evaluation dataset with more than 800 cloze sentences, written to probe for the function of over 200 objects. The sentences are divided into two tasks: an “easy” task where the language model has to choose between vocabulary with different functions (Task 1), and a “challenge” where it has to choose between vocabulary with the same function, yet only one vocabulary item is appropriate given real world constraints on functionality (Task 2). DistilBERT performs with about 80% accuracy for both tasks. To investigate how annotator variability affected those results, we developed a follow-on experiment where we compared our original results with wrong answers chosen based on embedding vector distances. Those results showed increased precision across documents but a 15% decrease in accuracy. We conclude that language models do have a strong knowledge basis for object reasoning, but will require creative fine-tuning strategies in order to be successfully deployed. 

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3. Leveraging Symbolic Knowledge Bases for Commonsense Natural Language Inference using Pattern Theory

   https://doi.org/10.1109/TPAMI.2023.3287837  

   Aakur, Sathyanarayanan N. ; Sarkar, Sudeep ( June 2023 , IEEE Transactions on Pattern Analysis and Machine Intelligence)

   The commonsense natural language inference (CNLI) tasks aim to select the most likely follow-up statement to a contextual description of ordinary, everyday events and facts. Current approaches to transfer learning of CNLI models across tasks require many labeled data from the new task. This paper presents a way to reduce this need for additional annotated training data from the new task by leveraging symbolic knowledge bases, such as ConceptNet. We formulate a teacher-student framework for mixed symbolic-neural reasoning, with the large-scale symbolic knowledge base serving as the teacher and a trained CNLI model as the student. This hybrid distillation process involves two steps. The first step is a symbolic reasoning process. Given a collection of unlabeled data, we use an abductive reasoning framework based on Grenander's pattern theory to create weakly labeled data. Pattern theory is an energy-based graphical probabilistic framework for reasoning among random variables with varying dependency structures. In the second step, the weakly labeled data, along with a fraction of the labeled data, is used to transfer-learn the CNLI model into the new task. The goal is to reduce the fraction of labeled data required. We demonstrate the efficacy of our approach by using three publicly available datasets (OpenBookQA, SWAG, and HellaSWAG) and evaluating three CNLI models (BERT, LSTM, and ESIM) that represent different tasks. We show that, on average, we achieve 63% of the top performance of a fully supervised BERT model with no labeled data. With only 1000 labeled samples, we can improve this performance to 72%. Interestingly, without training, the teacher mechanism itself has significant inference power. The pattern theory framework achieves 32.7% accuracy on OpenBookQA, outperforming transformer-based models such as GPT (26.6%), GPT-2 (30.2%), and BERT (27.1%) by a significant margin. We demonstrate that the framework can be generalized to successfully train neural CNLI models using knowledge distillation under unsupervised and semi-supervised learning settings. Our results show that it outperforms all unsupervised and weakly supervised baselines and some early supervised approaches, while offering competitive performance with fully supervised baselines. Additionally, we show that the abductive learning framework can be adapted for other downstream tasks, such as unsupervised semantic textual similarity, unsupervised sentiment classification, and zero-shot text classification, without significant modification to the framework. Finally, user studies show that the generated interpretations enhance its explainability by providing key insights into its reasoning mechanism. 

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4. Beta Embeddings for Multi-Hop Logical Reasoning in Knowledge Graphs

   Ren, Hongyu ; Leskovec, Jure. ( January 2020 , Neural Information Processing Systems (NeurIPS))

   One of the fundamental problems in Artificial Intelligence is to perform complex multi-hop logical reasoning over the facts captured by a knowledge graph (KG). This problem is challenging, because KGs can be massive and incomplete. Recent approaches embed KG entities in a low dimensional space and then use these embeddings to find the answer entities. However, it has been an outstanding challenge of how to handle arbitrary first-order logic (FOL) queries as present methods are limited to only a subset of FOL operators. In particular, the negation operator is not supported. An additional limitation of present methods is also that they cannot naturally model uncertainty. Here, we present BETAE, a probabilistic embedding framework for answering arbitrary FOL queries over KGs. BETAE is the first method that can handle a complete set of first-order logical operations: conjunction (∧), disjunction (∨), and negation (¬). A key insight of BETAE is to use probabilistic distributions with bounded support, specifically the Beta distribution, and embed queries/entities as distributions, which as a consequence allows us to also faithfully model uncertainty. Logical operations are performed in the embedding space by neural operators over the probabilistic embeddings. We demonstrate the performance of BETAE on answering arbitrary FOL queries on three large, incomplete KGs. While being more general, BETAE also increases relative performance by up to 25.4% over the current state-of-the-art KG reasoning methods that can only handle conjunctive queries without negation. 

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5. Generating Fake Cyber Threat Intelligence Using Transformer-Based Models

   Ranade, P. ; Piplai, A. ; Mittal, S. ; Joshi, A. ; Finin, T ( July 2021 , International Joint Conference on Neural Networks 2021 (IJCNN 2021))

   Cyber-defense systems are being developed to automatically ingest Cyber Threat Intelligence (CTI) that contains semi-structured data and/or text to populate knowledge graphs. A potential risk is that fake CTI can be generated and spread through Open-Source Intelligence (OSINT) communities or on the Web to effect a data poisoning attack on these systems. Adversaries can use fake CTI examples as training input to subvert cyber defense systems, forcing the model to learn incorrect inputs to serve their malicious needs. In this paper, we automatically generate fake CTI text descriptions using transformers. We show that given an initial prompt sentence, a public language model like GPT-2 with fine-tuning, can generate plausible CTI text with the ability of corrupting cyber-defense systems. We utilize the generated fake CTI text to perform a data poisoning attack on a Cybersecurity Knowledge Graph (CKG) and a cybersecurity corpus. The poisoning attack introduced adverse impacts such as returning incorrect reasoning outputs, representation poisoning, and corruption of other dependent AI-based cyber defense systems. We evaluate with traditional approaches and conduct a human evaluation study with cybersecurity professionals and threat hunters. Based on the study, professional threat hunters were equally likely to consider our fake generated CTI as true. 

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