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1. Quantifying how step-wise fluorination tunes local solute hydrophobicity, hydration shell thermodynamics and the quantum mechanical contributions of solute–water interactions

   https://doi.org/10.1039/D0CP04205F  

   Robalo, João R.; Mendes de Oliveira, Denilson; Imhof, Petra; Ben-Amotz, Dor; Vila Verde, Ana (October 2020, Physical Chemistry Chemical Physics)

   null (Ed.)

   The ability to locally tune solute–water interactions and thus control the hydrophilic/hydrophobic character of a solute is key to control molecular self-assembly and to develop new drugs and biocatalysts; it has been a holy grail in synthetic chemistry and biology. To date, the connection between (i) the hydrophobicity of a functional group; (ii) the local structure and thermodynamics of its hydration shell; and (iii) the relative influence of van der Waals (dispersion) and electrostatic interactions on hydration remains unclear. We investigate this connection using spectroscopic, classical simulation and ab initio methods by following the transition from hydrophile to hydrophobe induced by the step-wise fluorination of methyl groups. Along the transition, we find that water–solute hydrogen bonds are progressively transformed into dangling hydroxy groups. Each structure has a distinct thermodynamic, spectroscopic and quantum-mechanical signature connected to the associated local solute hydrophobicity and correlating with the relative contribution of electrostatics and dispersion to the solute–water interactions. 

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2. Aggregation and Adsorption Behavior of Organic Corrosion Inhibitors studied using Molecular Simulations

   Himanshu Singh, Yathish Kurapati (March 2019, NACE Corrosion conference)

   We have performed all-atom classical molecular dynamics simulations of aggregation and adsorption of different corrosion inhibitor molecules on metal surfaces. We report free energies of aggregation and adsorption of imidazolinium-type (henceforth referred to as imid) and quaternary ammonium-type (referred to as quat) corrosion inhibitors of different alkyl tail lengths. Corrosion inhibitor molecules show a strong tendency to adsorb onto metal surfaces in the unaggregated state. Inhibitor micelles, on the other hand, experience a free energy barrier to adsorption. The quat micelles are found to be thermodynamically stable in the adsorbed state whereas the imid micelles are only metastable in the adsorbed state. Quat micelles deform and partially disintegrate upon adsorption, which renders stability, while the imid micelles do not deform. The inhibitor molecules demonstrate a strong tendency to aggregate into micelles in the aqueous phase. The micellization free energy is found to be ~68 kBT for a micelle comprising of 18 molecules of imid molecules. 

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3. Contributions of Pore‐Scale Mixing and Mechanical Dispersion to Reaction During Active Spreading by Radial Groundwater Flow

   https://doi.org/10.1029/2019WR026276  

   Neupauer, Roseanna M.; Sather, Lauren J.; Mays, David C.; Crimaldi, John P.; Roth, Eric J. (July 2020, Water Resources Research)

   Abstract Spreading and mixing are complementary processes that promote reaction of two reactive aqueous solutes present in contiguous plumes in groundwater. Spreading reconfigures the plume geometry, elongating the interface between the plumes, while mixing increases the volume of aquifer occupied by each plume, bringing the solute molecules together to react. Since reaction only occurs where the two solute plumes are in contact with each other, local mechanisms that drive flow and transport near the interface between the plumes control the amount of reaction. This work uses local characteristics of the plumes and the flow field near the plume interface to analyze the relative contributions of pore‐scale mixing and mechanical dispersion to instantaneous, irreversible, bimolecular reaction in a homogeneous aquifer with active spreading caused by radial flow from a well. Two solutes are introduced in sequence at the well, creating concentric circular plumes. We allow for incomplete mixing of the solutes in the pore space, by modeling the pore space as a segregated compartment and a mixed compartment with first‐order mass transfer between the two compartments. We develop semi‐analytical expressions for concentrations of the solutes in both compartments. We found that the relative contribution of mechanical dispersion to reaction increases over time and also increases due to increases in the Peclet number, in the relative source concentration of the chasing solute, and in the mass transfer rate from the segregated compartment to the mixed compartment of the pore space. 

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4. Effect of vortex‐induced physical stress on fluorescent properties of dye‐containing poly(ethylene glycol)‐ block‐poly (lactic acid) micelles

   https://doi.org/10.1002/app.49743  

   Odom, Tyler L.; Blankenship, Jacob R.; Campos, Giselle; Mart, Devin C.; Liu, Wenyan; Wang, Risheng; Yoshimatsu, Keiichi (July 2020, Journal of Applied Polymer Science)

   Abstract The effect of vortex‐induced mechanical stresses on the fluorescent properties of dye‐containing poly(ethylene glycol)‐block‐poly(lactic acid) (PEG‐b‐PLA) block copolymer micelles has been investigated. PEG‐b‐PLA block copolymer micelles containing fluorescent dyes, 3,3′‐dioctadecyloxacarbocyanine perchlorate (DiO) and/or 1,1′‐dioctadecyl‐3,3,3′,3′‐tetramethylindocarbocyanine perchlorate (DiI), are prepared by a simple one‐step procedure that involves the self‐assembly of block copolymers and spontaneous incorporation of hydrophobic dyes into the core of the micelles. Upon vortexing, the micelle dispersion samples showed a decrease in fluorescence intensity in a rotational speed‐ and time‐dependent manner. The results demonstrated that the vortexing can alter the fluorescent properties of the dye‐containing PEG‐b‐PLA block copolymer micelle dispersion samples, suggesting the potential utility of block copolymer micelles as a mechanical stress‐responsive nanomaterial. 

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5. In-plane and out-of-plane anisotropies effect on Magnetic Tunnel Junction-Based Molecular Spintronics Device 

    Dahal, Bishnu; Savadkoohi, Marzieh; Mutunga, Eva; D’Angelo, Christopher; Lamberti, Vincent; Tyagi, Pawan (January 2022, AIP advances)

   "Magnetic tunnel junction-based molecular spintronics devices (MTJMSDs) are designed by covalently connecting the paramagnetic molecules across two ferromagnets (FM) electrodes of a magnetic tunnel junction (MTJ). MTJMSD provides opportunities to connect FM electrodes of a vast range of anisotropy properties to a variety of molecules of length scale. Our prior studies showed that the paramagnetic molecules can produce strong antiferromagnetic coupling with FM electrodes. The device properties of MTJMSD depend upon various factors such as anisotropy, various couplings, spin fluctuation, thermal energy, device size, etc. Here, we report a theoretical Monte Carlo Simulation (MCS) study to explain the impact of anisotropy on the MTJMSD equilibrium properties. We studied the magnetic properties of MTJMSDs when in-plane and out-of-plane anisotropies acted simultaneously and together on one of its ferromagnetic electrodes. In-plane anisotropy causes multiple magnetic phases of opposite spins. The multiple magnetic phases vanished at higher thermal energy. The device still maintained higher magnetic moment because of anisotropy. The out-of-plane anisotropy caused a dominant magnetic phase in an electrode rather than multiple magnetic phases. The simultaneous in-plane and out-of-plane anisotropies on the same electorate negated the anisotropy effect. The study of the competing effect of anisotropies opens the insight into experimental observations of MTJMSD studies." 

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