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1. Dietary partitioning promotes the coexistence of planktivorous species on coral reefs.

   Leray, M.; Alldredge, A. L.; Yang, J. Y.; Meyer, C. P.; Holbrook, S. J.; Schmitt, R. J.; Knowlton, N.; Brooks, A. J. (January 2019, Molecular ecology)

   Theories involving niche diversification to explain high levels of tropical diversity propose that species are more likely to co-occur if they partition at least one dimension of their ecological niche space. Yet, numerous species appear to have widely overlapping niches based upon broad categorizations of resource use or functional traits. In particular, the extent to which food partitioning contributes to species coexistence in hyperdiverse tropical ecosystems remains unresolved. Here, we use a molecular approach to investigate inter- and intraspecific dietary partitioning between two species of damselfish (Dascyllus flavicaudus, Chromis viridis) that commonly co-occur in branching corals. Species-level identification of their diverse zooplankton prey revealed significant differences in diet composition between species despite their seemingly similar feeding strategies. Dascyllus exhibited a more diverse diet than Chromis, whereas Chromis tended to select larger prey items. A large calanoid copepod, Labidocera sp., found in low density and higher in the water column during the day, explained more than 19% of the variation in dietary composition between Dascyllus and Chromis. Dascyllus did not significantly shift its diet in the presence of Chromis, which suggests intrinsic differences in feeding behaviour. Finally, prey composition significantly shifted during the ontogeny of both fish species. Our findings show that levels of dietary specialization among coral reef associated species have likely been underestimated, and they underscore the importance of characterizing trophic webs in tropical ecosystems at higher levels of taxonomic resolution. They also suggest that niche redundancy may not be as common as previously thought. 

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2. Experimental N and P additions relieve stoichiometric constraints on organic matter flows through five stream food webs

   https://doi.org/10.1111/1365-2656.13197  

   Demi, Lee M.; Benstead, Jonathan P.; Rosemond, Amy D.; Maerz, John C.; Clay, ed., Natalie (April 2020, Journal of Animal Ecology)

   Abstract Human activities have dramatically altered global patterns of nitrogen (N) and phosphorus (P) availability. This pervasive nutrient pollution is changing basal resource quality in food webs, thereby affecting rates of biological productivity and the pathways of energy and material flow to higher trophic levels.Here, we investigate how the stoichiometric quality of basal resources modulates patterns of material flow through food webs by characterizing the effects of experimental N and P enrichment on the trophic basis of macroinvertebrate production and flows of dominant food resources to consumers in five detritus‐based stream food webs.After a pre‐treatment year, each stream received N and P at different concentrations for 2 years, resulting in a unique dissolved N:P ratio (target range from 128:1 to 2:1) for each stream. We combined estimates of secondary production and gut contents analysis to calculate rates of material flow from basal resources to macroinvertebrate consumers in all five streams, during all 3 years of study.Nutrient enrichment resulted in a 1.5× increase in basal resource flows to primary consumers, with the greatest increases from biofilms and wood. Flows of most basal resources were negatively related to resource C:P, indicating widespread P limitation in these detritus‐based food webs. Nutrient enrichment resulted in a greater proportion of leaf litter, the dominant resource flow‐pathway, being consumed by macroinvertebrates, with that proportion increasing with decreasing leaf litter C:P. However, the increase in efficiency with which basal resources were channelled into metazoan food webs was not propagated to macroinvertebrate predators, as flows of prey did not systematically increase following enrichment and were unrelated to basal resource flows.This study suggests that ongoing global increases in N and P supply will increase organic matter flows to metazoan food webs in detritus‐based ecosystems by reducing stoichiometric constraints at basal trophic levels. However, the extent to which those flows are propagated to the highest trophic levels likely depends on responses of individual prey taxa and their relative susceptibility to predation. 

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3. Functional impact and trophic morphology of small, sand‐sifting fishes on coral reefs

   https://doi.org/10.1111/1365-2435.14087  

   Brodnicke, Ole Bjørn; Hansen, Camilla Elisabeth; Huie, Jonathan Michael; Brandl, Simon Johannes; Worsaae, Katrine (May 2022, Functional Ecology)

   Abstract Oligotrophic tropical coral reefs are built on efficient internal energy and nutrient cycling, facilitated by tight trophic interactions. In the competition for available prey, some small fishes have evolved to feed on apparently barren sand patches that connect hard‐substratum patches in many reef habitats.One strategy for obtaining prey from a particulate matrix is to sift out small prey items from the sediment (often called ‘winnowing’). Yet, the trophic link between small winnowing consumers and their prey are poorly resolved, let alone the morphological specialisations that enable this foraging behaviour.We used aquarium‐based feeding experiments to quantify the impact of winnowing by two sand‐dwelling goby species (Valenciennea sexguttataandValenciennea strigata) on meiobenthos abundance and diversity and examined their actual ingestion of meiobenthos using gut content analysis. To identify potential morphological structures involved in winnowing, we investigated the gobies' feeding apparatus with electron microscopy (SEM) and micro‐computed tomography (micro‐CT).After 4 days of sifting through the sand matrix, the two species significantly reduced meiobenthic prey abundance by 30.7% ± 9.2SE(V. sexguttata) and 46.1% ± 5.1SE(V. strigata), but had little impact on the meiobenthic diversity. The most abundant prey groups (copepods and annelids) experienced the greatest reduction in number, suggesting selection by size, shape and density of prey items. Furthermore, gut content analysis confirmed that winnowing gobies can efficiently separate meiobenthic prey from heavier inorganic particles (sand), likely facilitated by a specialised epibranchial lobe, pharyngeal jaws and highly abundant papillose taste buds in the oropharyngeal cavity.Our results provide important background on the trophic link between the meiobenthos and winnowing gobies on coral reefs. The revealed specialisations of the goby feeding apparatus facilitate sand‐sifting foraging behaviour and access to an otherwise inaccessible trophic niche of microscopic prey. By having evolved a specialised strategy to obtain nutritious and highly abundant prey from seemingly barren sand, we suggest that winnowing gobies act as an important conduit for sand‐derived energy to higher trophic levels. Read the freePlain Language Summaryfor this article on the Journal blog. 

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4. Dryland state transitions alter trophic interactions in a predator–prey system

   https://doi.org/10.1111/1365-2656.14197  

   Wagnon, Casey_J; Bestelmeyer, Brandon_T; Schooley, Robert_L (October 2024, Journal of Animal Ecology)

   Abstract Environmental change is expected to alter trophic interactions and food web dynamics with consequences for ecosystem structure, function and stability. However, the mechanisms by which environmental change influences top‐down and bottom‐up processes are poorly documented.Here, we examined how environmental change caused by shrub encroachment affects trophic interactions in a dryland. The predator–prey system included an apex canid predator (coyote;Canis latrans), an intermediate canid predator (kit fox;Vulpes macrotis), and two herbivorous lagomorph prey (black‐tailed jackrabbit,Lepus californicus; and desert cottontail,Sylvilagus audubonii) in the Chihuahuan Desert of New Mexico, USA.We evaluated alternative hypotheses for how shrub encroachment could affect habitat use and trophic interactions, including (i) modifying bottom‐up processes by reducing herbaceous forage, (ii) modifying top‐down processes by changing canid space use or the landscape of fear experienced by lagomorph prey and (iii) altering intraguild interactions between the dominant coyote and the intermediate kit fox. We used 7 years of camera trap data collected across grassland‐to‐shrubland gradients under variable precipitation to test our a priori hypotheses within a structural equation modelling framework.Lagomorph prey responded strongly to bottom‐up pulses during years of high summer precipitation, but only at sites with moderate to high shrub cover. This outcome is inconsistent with the hypothesis that bottom‐up effects should be strongest in grasslands because of greater herbaceous food resources. Instead, this interaction likely reflects changes in the landscape of fear because perceived predation risk in lagomorphs is reduced in shrub‐dominated habitats. Shrub encroachment did not directly affect predation pressure on lagomorphs by changing canid site use intensity. However, site use intensity of both canid species was positively associated with jackrabbits, indicating additional bottom‐up effects. Finally, we detected interactions between predators in which coyotes restricted space use of kit foxes, but these intraguild interactions also depended on shrub encroachment.Our findings demonstrate how environmental change can affect trophic interactions beyond traditional top‐down and bottom‐up processes by altering perceived predation risk in prey. These results have implications for understanding spatial patterns of herbivory and the feedbacks that reinforce shrubland states in drylands worldwide. 

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5. Bioenergy landscapes drive trophic shifts in generalist ants

   https://doi.org/10.1111/1365-2656.13407  

   Helms, IV, Jackson A.; Roeder, Karl A.; Ijelu, Selassie E.; Ratcliff, Ian; Haddad, Nick M.; Shik, ed., Jonathan Zvi (December 2020, Journal of Animal Ecology)

   Abstract Changes in trophic niche—the pathways through which an organism obtains energy and nutrients—are a fundamental way in which organisms respond to environmental conditions. But the capacity for species to alter their trophic niches in response to global change, and the ways they do so when able, remain largely unknown.Here we examine food webs in three long‐term and large‐scale experiments to test how resource availability and nutritional requirements interact to determine an organism's trophic niche in the context of one of the largest global trends in land use—the rise in bioenergy production.We use carbon and nitrogen stable isotope analyses to characterize arthropod food webs across three biofuel crops representing a gradient in plant resource richness (corn monocultures, fields dominated by native switchgrass and restored prairie), and to quantify changes in the trophic niche of a widespread generalist ant species across habitats. In doing so, we measure the effects of basal resource richness on food chain length, niche breadth and trophic position. We frame our results in the context of two hypotheses that explain variation in trophic niche—the niche variation hypothesis which emphasizes the importance of resource diversity and ecological opportunity, and the optimal diet hypothesis which emphasizes dietary constraints and the availability of optimal resources.Increasing plant richness lengthened food chains by 10%–20% compared to monocultures. Niche breadths of generalist ants did not vary with resource richness, suggesting they were limited by optimal diet requirements and constraints rather than by ecological opportunity. The ants instead responded to changes in plant richness by shifting their estimated trophic position. In resource‐poor monocultures, the ants were top predators, sharing a trophic position with predatory spiders. In resource‐rich environments, in contrast, the ants were omnivores, relying on a mix of animal prey and plant‐based resources.In addition to highlighting novel ecosystem impacts of alternate bioenergy landscapes, our results suggest that niche breadth and trophic diversification depend more on the presence of optimal resources than on ecological opportunity alone. 

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