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1. Recommender-as-a-Service with Chatbot Guided Domain-science Knowledge Discovery in a Science Gateway

   https://doi.org/10.1002/cpe.6080  

   Vekaria, K. ; Calyam, P. ; Sivarathri, S. ; Wang, S. ; Zhang, Y. ; Pandey, A. ; Chen, C. ; Xu, D. ; Joshi, T. ; Nair, S.S. ( January 2020 , Wiley Concurrency and Computation: Practice and Experience)

   Scientists in disciplines such as neuroscience and bioinformatics are increasingly relying on science gateways for experimentation on voluminous data, as well as analysis and visualization in multiple perspectives. Though current science gateways provide easy access to computing resources, datasets and tools specific to the disciplines, scientists often use slow and tedious manual efforts to perform knowledge discovery to accomplish their research/education tasks. Recommender systems can provide expert guidance and can help them to navigate and discover relevant publications, tools, data sets, or even automate cloud resource configurations suitable for a given scientific task. To realize the potential of integration of recommenders in science gateways in order to spur research productivity,we present a novel “OnTimeRecommend" recommender system. The OnTimeRecommend comprises of several integrated recommender modules implemented as microservices that can be augmented to a science gateway in the form of a recommender-as-a-service. The guidance for use of the recommender modules in a science gateway is aided by a chatbot plug-in viz., Vidura Advisor. To validate our OnTimeRecommend, we integrate and show benefits for both novice and expert users in domain-specific knowledge discovery within two exemplar science gateways, one in neuroscience (CyNeuro) and the other in bioinformatics (KBCommons).
2. Interactive Demonstrations and Hands-On Use of thenet.science Cyberinfrastructure for Network Science Chairs’ Welcome and Tutorial Summary

   https://doi.org/10.1145/3462741.3466679  

   Barrow, Golda ; Kuhlman, Chris J. ; Machi, Dustin ; Ravi, S. S. ( June 2021 , 13th ACM Web Science Conference 2021)

   Networks are readily identifiable in many aspects of society: cellular telephone networks and social networks are two common examples. Networks are studied within many academic disciplines. Consequently, a large body of (open-source) software is being produced to perform computations on networks. A cyberinfrastructure for network science, called net.science, is being built to provide a computational platform and resource for both producers and consumers of networks and software tools. This tutorial is a hands-on demonstration of some of net.science’s features.
3. A Comprehensive Tutorial on Science DMZ

   https://doi.org/10.1109/COMST.2018.2876086  

   Crichigno, Jorge ; Bou-Harb, Elias ; Ghani, Nasir ( May 2019 , IEEE Communications surveys and tutorials)

   Science and engineering applications are now generating data at an unprecedented rate. From large facilities such as the Large Hadron Collider to portable DNA sequencing devices, these instruments can produce hundreds of terabytes in short periods of time. Researchers and other professionals rely on networks to transfer data between sensing locations, instruments, data storage devices, and computing systems. While general-purpose networks, also referred to as enterprise networks, are capable of transporting basic data, such as e-mails and Web content, they face numerous challenges when transferring terabyte- and petabyte-scale data. At best, transfers of science data on these networks may last days or even weeks. In response to this challenge, the Science Demilitarized Zone (Science DMZ) has been proposed. The Science DMZ is a network or a portion of a network designed to facilitate the transfer of big science data. The main elements of the Science DMZ include: 1) specialized end devices, referred to as data transfer nodes (DTNs), built for sending/receiving data at a high speed over wide area networks; 2) high-throughput, friction-free paths connecting DTNs, instruments, storage devices, and computing systems; 3) performance measurement devices to monitor end-to-end paths over multiple domains; and 4) security policies and enforcement mechanismsmore »tailored for high-performance environments. Despite the increasingly important role of Science DMZs, the literature is still missing a guideline to provide researchers and other professionals with the knowledge to broaden the understanding and development of Science DMZs. This paper addresses this gap by presenting a comprehensive tutorial on Science DMZs. The tutorial reviews fundamental network concepts that have a large impact on Science DMZs, such as router architecture, TCP attributes, and operational security. Then, the tutorial delves into protocols and devices at different layers, from the physical cyberinfrastructure to application-layer tools and security appliances, that must be carefully considered for the optimal operation of Science DMZs. This paper also contrasts Science DMZs with general-purpose networks, and presents empirical results and use cases applicable to current and future Science DMZs.« less
4. Optimal Frameworks for Detecting Anomalies in Sensor-Intensive Heterogeneous Networks

   https://doi.org/10.1287/ijoc.2022.1192  

   Moghaddass, Ramin ; Guan, Yongtao ( January 2022 , INFORMS Journal on Computing)

   Many network/graph structures are continuously monitored by various sensors that are placed at a subset of nodes and edges. The multidimensional data collected from these sensors over time create large-scale graph data in which the data points are highly dependent. Monitoring large-scale attributed networks with thousands of nodes and heterogeneous sensor data to detect anomalies and unusual events is a complex and computationally expensive process. This paper introduces a new generic approach inspired by state-space models for network anomaly detection that can utilize the information from the network topology, the node attributes (sensor data), and the anomaly propagation sets in an integrated manner to analyze the entire network all at once. This article presents how heterogeneous network sensor data can be analyzed to locate the sources of anomalies as well as the anomalous regions in a network, which can be impacted by one or multiple anomalies at any time instance. Experimental results demonstrate the superior performance of our proposed framework in detecting anomalies in attributed graphs. Summary of Contribution: With the increasing availability of large-scale network sensors and rapid advances in artificial intelligence methods, fundamentally new analytical tools are needed that can integrate data collected from sensors across the networksmore »for decision making while taking into account the stochastic and topological dependencies between nodes, sensors, and anomalies. This paper develops a framework to intelligently and efficiently analyze complex and highly dependent data collected from disparate sensors across large-scale network/graph structures to detect anomalies and abnormal behavior in real time. Unlike general purpose (often black-box) machine learning models, this paper proposes a unique framework for network/graph structures that incorporates the complexities of networks and interdependencies between network entities and sensors. Because of the multidisciplinary nature of the paper that involves optimization, machine learning, and system monitoring and control, it can help researchers in both operations research and computer science domains to develop new network-specific computing tools and machine learning frameworks to efficiently manage large-scale network data.« less
5. Enabling Data Streaming-based Science Gateways through Federated Cyberinfrastructure

   Rodero, I ; Qin, Y ; Valls, J ; Simonet, A ; Villalobos, J.J. ; Parashar, M ; Youn, C ; Wang, C ; Thareja, K ; Ruth, P ; et al ( January 2019 , Gateways 2019)

   Large scientific facilities are unique and complex infrastructures that have become fundamental instruments for enabling high quality, world-leading research to tackle scientific problems at unprecedented scales. Cyberinfrastructure (CI) is an essential component of these facilities, providing the user community with access to data, data products, and services with the potential to transform data into knowledge. However, the timely evolution of the CI available at large facilities is challenging and can result in science communities requirements not being fully satisfied. Furthermore, integrating CI across multiple facilities as part of a scientific workflow is hard, resulting in data silos. In this paper, we explore how science gateways can provide improved user experiences and services that may not be offered at large facility datacenters. Using a science gateway supported by the Science Gateway Community Institute, which provides subscription-based delivery of streamed data and data products from the NSF Ocean Observatories Initiative (OOI), we propose a system that enables streaming-based capabilities and workflows using data from large facilities, such as the OOI, in a scalable manner. We leverage data infrastructure building blocks, such as the Virtual Data Collaboratory, which provides data and comput- ing capabilities in the continuum to efficiently and collaboratively integrate multiplemore »data-centric CIs, build data-driven workflows, and connect large facilities data sources with NSF-funded CI, such as XSEDE. We also introduce architectural solutions for running these workflows using dynamically provisioned federated CI.« less