skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Coral Reef Monitoring by Scuba Divers Using Underwater Photogrammetry and Geodetic Surveying
Underwater photogrammetry is increasingly being used by marine ecologists because of its ability to produce accurate, spatially detailed, non-destructive measurements of benthic communities, coupled with affordability and ease of use. However, independent quality control, rigorous imaging system set-up, optimal geometry design and a strict modeling of the imaging process are essential to achieving a high degree of measurable accuracy and resolution. If a proper photogrammetric approach that enables the formal description of the propagation of measurement error and modeling uncertainties is not undertaken, statements regarding the statistical significance of the results are limited. In this paper, we tackle these critical topics, based on the experience gained in the Moorea Island Digital Ecosystem Avatar (IDEA) project, where we have developed a rigorous underwater photogrammetric pipeline for coral reef monitoring and change detection. Here, we discuss the need for a permanent, underwater geodetic network, which serves to define a temporally stable reference datum and a check for the time series of photogrammetrically derived three-dimensional (3D) models of the reef structure. We present a methodology to evaluate the suitability of several underwater camera systems for photogrammetric and multi-temporal monitoring purposes and stress the importance of camera network geometry to minimize the deformations of photogrammetrically derived 3D reef models. Finally, we incorporate the measurement and modeling uncertainties of the full photogrammetric process into a simple and flexible framework for detecting statistically significant changes among a time series of models.  more » « less
Award ID(s):
1637396
PAR ID:
10235112
Author(s) / Creator(s):
; ; ; ; ; ; ; ; ;
Date Published:
Journal Name:
Remote Sensing
Volume:
12
Issue:
18
ISSN:
2072-4292
Page Range / eLocation ID:
3036
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Creating 3-dimensional (3D) models of underwater scenes has become a common approach for monitoring coral reef changes and its structural complexity. Also in underwater archeology, 3D models are often created using underwater optical imagery. In this paper, we focus on the aspect of detecting small changes in the coral reef using a multi-temporal photogrammetric modelling approach, which requires a high quality control network. We show that the quality of a good geodetic network limits the direct change detection, i.e., without any further registration process. As the photogrammetric accuracy is expected to exceed the geodetic network accuracy by at least one order of magnitude, we suggest to do a fine registration based on a number of signalized points. This work is part of the Moorea Island Digital Ecosystem Avatar (IDEA) project that has been initiated in 2013 by a group of international researchers (https://mooreaidea.ethz.ch/). 
    more » « less
  2. Synopsis Acquiring accurate 3D biological models efficiently and economically is important for morphological data collection and analysis in organismal biology. In recent years, structure-from-motion (SFM) photogrammetry has become increasingly popular in biological research due to its flexibility and being relatively low cost. SFM photogrammetry registers 2D images for reconstructing camera positions as the basis for 3D modeling and texturing. However, most studies of organismal biology still relied on commercial software to reconstruct the 3D model from photographs, which impeded the adoption of this workflow in our field due the blocking issues such as cost and affordability. Also, prior investigations in photogrammetry did not sufficiently assess the geometric accuracy of the models reconstructed. Consequently, this study has two goals. First, we presented an affordable and highly flexible SFM photogrammetry pipeline based on the open-source package OpenDroneMap (ODM) and its user interface WebODM. Second, we assessed the geometric accuracy of the photogrammetric models acquired from the ODM pipeline by comparing them to the models acquired via microCT scanning, the de facto method to image skeleton. Our sample comprised 15 Aplodontia rufa (mountain beaver) skulls. Using models derived from microCT scans of the samples as reference, our results showed that the geometry of the models derived from ODM was sufficiently accurate for gross metric and morphometric analysis as the measurement errors are usually around or below 2%, and morphometric analysis captured consistent patterns of shape variations in both modalities. However, subtle but distinct differences between the photogrammetric and microCT-derived 3D models could affect the landmark placement, which in return affected the downstream shape analysis, especially when the variance within a sample is relatively small. At the minimum, we strongly advise not combining 3D models derived from these two modalities for geometric morphometric analysis. Our findings can be indictive of similar issues in other SFM photogrammetry tools since the underlying pipelines are similar. We recommend that users run a pilot test of geometric accuracy before using photogrammetric models for morphometric analysis. For the research community, we provide detailed guidance on using our pipeline for building 3D models from photographs. 
    more » « less
  3. The evolution of underwater photogrammetry allows to realize 3D models of submerged object and structures throughout the use of rapid and efficient procedures either in terms of data acquisition and data processing. These procedures are based on solutions that are applied using natural control points, signalized markers and tie points; the most common algorithms are based on Structure from Motion (SfM) approach. The limit of these applications is sometimes due to the final accuracy, especially when the goal is a centimeter level of accuracy. This accuracy should be necessary when dealing with a survey devoted to deformation control purposes. An example is the underwater photogrammetry for the determination of coral growth; it is effectively a movement or a deformation detection issue where the geometric change is almost at centimeter or few centimeters accuracy level. When dealing with deformation control applications, a geodetic network is essential to realize a stable and unambiguous reference frame through the accurate and permanent installation of Ground Control Points (GCPs). Such a network, indeed, permits a robust reference frame for the georeferencing of images blocks in the different époques of data acquisition. Therefore, the comparison among subsequent photogrammetric restitutions is based on homogeneous 3D models that have been oriented in the same absolute reference system. The photogrammetric survey is based on a methodological approach especially adapted to underwater biometry (like coral growth determination) and to underwater archaeology. The approach is suitable both for modeling objects of relatively reduced dimensions and for structures with a length of ten meters or more, such as coral barriers, wrecks and long walls. The paper describes underwater photogrammetric surveys on sites at different extensions, the geodetic GCPs reference network installation and measurements (distance and elevation difference observations) as well as preliminary results of the network adjustment. A brief description of image acquisition at a different scales and the resulting 3D model of first campaign are also shown. 
    more » « less
  4. The study of high-speed phenomena in underwater environments is pivotal across diverse scientific and engineering domains. This paper introduces a high-speed (3D) integral imaging (InIm) based system to 1) visualize high-speed dynamic underwater events, and 2) detect modulated signals for potential optical communication applications. The proposed system is composed of a high-speed camera with a lenslet array-based integral imaging setup to capture and reconstruct 3D images of underwater scenes and detect temporally modulated optical signals. For 3D visualization, we present experiments to capture the elemental images of high-speed underwater events with passive integral imaging, which were then computationally reconstructed to visualize 3D dynamic underwater scenes. We present experiments for 3D imaging and reconstruct the depth map of high-speed underwater dynamic jets of air bubbles, offering depth information and visualizing the 3D movement of these jets. To detect temporally modulated optical signals, we present experiments to demonstrate the ability to capture and reconstruct high-speed underwater modulated optical signals in turbidity. To the best of our knowledge, this is the first report on high-speed underwater 3D integral imaging for 3D visualization and optical signal communication. The findings illustrate the potential of high-speed integral imaging in the visualization and detection of underwater dynamic events, which can be useful in underwater exploration and monitoring. 
    more » « less
  5. We present the design, implementation, and evaluation of SeaScan, an energy-efficient camera for 3D imaging of underwater environments. At the core of SeaScan’s design is a trinocular lensing system, which employs three ultra-lowpower monochromatic image sensors to reconstruct color images. Each of the sensors is equipped with a different filter (red, green, and blue) for color capture. The design introduces multiple innovations to enable reconstructing 3D color images from the captured monochromatic ones. This includes an ML-based cross-color alignment architecture to combine the monochromatic images. It also includes a cross-refractive compensation technique that overcomes the distortion of the wide-angle imaging of the low-power CMOS sensors in underwater environments.We built an end-to-end prototype of SeaScan, including color filter integration, 3D reconstruction, compression, and underwater backscatter communication. Our evaluation in real-world underwater environments demonstrates that SeaScan can capture underwater color images with as little as 23.6 mJ, which represents 37× reduction in energy consumption in comparison to the lowest-energy state-of-the-art underwater imaging system.We also report qualitative and quantitative evaluation of SeaScan’s color reconstruction and demonstrate its success in comparison to multiple potential alternative techniques (both geometric and ML-based) in the literature. SeaScan’s ability to image underwater environments at such low energy opens up important applications in long-term monitoring for ocean climate change, seafood production, and scientific discovery. 
    more » « less