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1. Learning and Strongly Truthful Multi-Task Peer Prediction: A Variational Approach

   Schoenebeck, Grant ; Yu, Fang-Yi ( January 2021 , 12th Innovations in Theoretical Computer Science Conference (ITCS 2021))

   null (Ed.)

   Peer prediction mechanisms incentivize agents to truthfully report their signals even in the absence of verification by comparing agents’ reports with those of their peers. In the detail-free multi-task setting, agents are asked to respond to multiple independent and identically distributed tasks, and the mechanism does not know the prior distribution of agents’ signals. The goal is to provide an epsilon-strongly truthful mechanism where truth-telling rewards agents “strictly” more than any other strategy profile (with epsilon additive error) even for heterogeneous agents, and to do so while requiring as few tasks as possible. We design a family of mechanisms with a scoring function that maps a pair of reports to a score. The mechanism is strongly truthful if the scoring function is “prior ideal”. Moreover, the mechanism is epsilon-strongly truthful as long as the scoring function used is sufficiently close to the ideal scoring function. This reduces the above mechanism design problem to a learning problem – specifically learning an ideal scoring function. Because learning the prior distribution is sufficient (but not necessary) to learn the scoring function, we can apply standard learning theory techniques that leverage side information about the prior (e.g., that it is close to some parametric model). Furthermore, we derive a variational representation of an ideal scoring function and reduce the learning problem into an empirical risk minimization. We leverage this reduction to obtain very general results for peer prediction in the multi-task setting. Specifically, Sample Complexity. We show how to derive good bounds on the number of tasks required for different types of priors–in some cases exponentially improving previous results. In particular, we can upper bound the required number of tasks for parametric models with bounded learning complexity. Furthermore, our reduction applies to myriad continuous signal space settings. To the best of our knowledge, this is the first peer-prediction mechanism on continuous signals designed for the multi-task setting. Connection to Machine Learning. We show how to turn a soft-predictor of an agent’s signals (given the other agents’ signals) into a mechanism. This allows the practical use of machine learning algorithms that give good results even when many agents provide noisy information. Stronger Properties. In the finite setting, we obtain -strongly truthful mechanisms for any stochastically relevant prior. Prior works either only apply to more restrictive settings, or achieve a weaker notion of truthfulness (informed truthfulness). 

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2. Information Elicitation from Rowdy Crowds

   https://doi.org/10.1145/3442381.3449840  

   Schoenebeck, Grant ; Yu, Fang-Yi ; Zhang, Yichi ( April 2021 , Proceedings of the Web Conference (WWW '21))

   We initiate the study of information elicitation mechanisms for a crowd containing both self-interested agents, who respond to incentives, and adversarial agents, who may collude to disrupt the system. Our mechanisms work in the peer prediction setting where ground truth need not be accessible to the mechanism or even exist. We provide a meta-mechanism that reduces the design of peer prediction mechanisms to a related robust learning problem. The resulting mechanisms are ϵ-informed truthful, which means truth-telling is the highest paid ϵ-Bayesian Nash equilibrium (up to ϵ-error) and pays strictly more than uninformative equilibria. The value of ϵ depends on the properties of robust learning algorithm, and typically limits to 0 as the number of tasks and agents increase. We show how to use our meta-mechanism to design mechanisms with provable guarantees in two important crowdsourcing settings even when some agents are self-interested and others are adversarial. 

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3. Cooperative Inverse Decision Theory for Uncertain Preferences

   Robertson, Zachary ; Zhang, Hantao ; Koyejo, Sanmi ( April 2023 , Proceedings of the International Workshop on Artificial Intelligence and Statistics)

   Inverse decision theory (IDT) aims to learn a performance metric for classification by eliciting expert classifications on examples. However, elicitation in practical settings may require many classifications of potentially ambiguous examples. To improve the efficiency of elicitation, we propose the cooperative inverse decision theory (CIDT) framework as a formalization of the performance metric elicitation problem. In cooperative inverse decision theory, the expert and a machine play a game where both are rewarded according to the expert’s performance metric, but the machine does not initially know what this function is. We show that optimal policies in this framework produce active learning that leads to an exponential improvement in sample complexity over previous work. One of our key findings is that a broad class of sub-optimal experts can be represented as having uncertain preferences. We use this finding to show such experts naturally fit into our proposed framework extending inverse decision theory to efficiently deal with decision data that is sub-optimal due to noise, conflicting experts, or systematic error 

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4. Distributionally Robust Structure Learning for Discrete Pairwise Markov Networks

   Li, Yeshu ; Shi, Zhan ; Zhang, Xinhua ; Ziebart, Brian ( March 2022 , International Conference on Artificial Intelligence and Statistics)

   We consider the problem of learning the underlying structure of a general discrete pairwise Markov network. Existing approaches that rely on empirical risk minimization may perform poorly in settings with noisy or scarce data. To overcome these limitations, we propose a computationally efficient and robust learning method for this problem with near-optimal sample complexities. Our approach builds upon distributionally robust optimization (DRO) and maximum conditional log-likelihood. The proposed DRO estimator minimizes the worst-case risk over an ambiguity set of adversarial distributions within bounded transport cost or f-divergence of the empirical data distribution. We show that the primal minimax learning problem can be efficiently solved by leveraging sufficient statistics and greedy maximization in the ostensibly intractable dual formulation. Based on DRO’s approximation to Lipschitz and variance regularization, we derive near-optimal sample complexities matching existing results. Extensive empirical evidence with different corruption models corroborates the effectiveness of the proposed methods. 

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5. The Temple University Digital Pathology Corpus: The Breast Tissue Subset

   https://doi.org/10.1109/SPMB52430.2021.9672275  

   Wevodau, Z. ; Doshna, B. ; Jhala, N. ; Akhtar, I. ; Obeid, I. ; Picone, J. ( December 2021 , Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB))

   Obeid, I. (Ed.)

   The Neural Engineering Data Consortium (NEDC) is developing the Temple University Digital Pathology Corpus (TUDP), an open source database of high-resolution images from scanned pathology samples [1], as part of its National Science Foundation-funded Major Research Instrumentation grant titled “MRI: High Performance Digital Pathology Using Big Data and Machine Learning” [2]. The long-term goal of this project is to release one million images. We have currently scanned over 100,000 images and are in the process of annotating breast tissue data for our first official corpus release, v1.0.0. This release contains 3,505 annotated images of breast tissue including 74 patients with cancerous diagnoses (out of a total of 296 patients). In this poster, we will present an analysis of this corpus and discuss the challenges we have faced in efficiently producing high quality annotations of breast tissue. It is well known that state of the art algorithms in machine learning require vast amounts of data. Fields such as speech recognition [3], image recognition [4] and text processing [5] are able to deliver impressive performance with complex deep learning models because they have developed large corpora to support training of extremely high-dimensional models (e.g., billions of parameters). Other fields that do not have access to such data resources must rely on techniques in which existing models can be adapted to new datasets [6]. A preliminary version of this breast corpus release was tested in a pilot study using a baseline machine learning system, ResNet18 [7], that leverages several open-source Python tools. The pilot corpus was divided into three sets: train, development, and evaluation. Portions of these slides were manually annotated [1] using the nine labels in Table 1 [8] to identify five to ten examples of pathological features on each slide. Not every pathological feature is annotated, meaning excluded areas can include focuses particular to these labels that are not used for training. A summary of the number of patches within each label is given in Table 2. To maintain a balanced training set, 1,000 patches of each label were used to train the machine learning model. Throughout all sets, only annotated patches were involved in model development. The performance of this model in identifying all the patches in the evaluation set can be seen in the confusion matrix of classification accuracy in Table 3. The highest performing labels were background, 97% correct identification, and artifact, 76% correct identification. A correlation exists between labels with more than 6,000 development patches and accurate performance on the evaluation set. Additionally, these results indicated a need to further refine the annotation of invasive ductal carcinoma (“indc”), inflammation (“infl”), nonneoplastic features (“nneo”), normal (“norm”) and suspicious (“susp”). This pilot experiment motivated changes to the corpus that will be discussed in detail in this poster presentation. To increase the accuracy of the machine learning model, we modified how we addressed underperforming labels. One common source of error arose with how non-background labels were converted into patches. Large areas of background within other labels were isolated within a patch resulting in connective tissue misrepresenting a non-background label. In response, the annotation overlay margins were revised to exclude benign connective tissue in non-background labels. Corresponding patient reports and supporting immunohistochemical stains further guided annotation reviews. The microscopic diagnoses given by the primary pathologist in these reports detail the pathological findings within each tissue site, but not within each specific slide. The microscopic diagnoses informed revisions specifically targeting annotated regions classified as cancerous, ensuring that the labels “indc” and “dcis” were used only in situations where a micropathologist diagnosed it as such. Further differentiation of cancerous and precancerous labels, as well as the location of their focus on a slide, could be accomplished with supplemental immunohistochemically (IHC) stained slides. When distinguishing whether a focus is a nonneoplastic feature versus a cancerous growth, pathologists employ antigen targeting stains to the tissue in question to confirm the diagnosis. For example, a nonneoplastic feature of usual ductal hyperplasia will display diffuse staining for cytokeratin 5 (CK5) and no diffuse staining for estrogen receptor (ER), while a cancerous growth of ductal carcinoma in situ will have negative or focally positive staining for CK5 and diffuse staining for ER [9]. Many tissue samples contain cancerous and non-cancerous features with morphological overlaps that cause variability between annotators. The informative fields IHC slides provide could play an integral role in machine model pathology diagnostics. Following the revisions made on all the annotations, a second experiment was run using ResNet18. Compared to the pilot study, an increase of model prediction accuracy was seen for the labels indc, infl, nneo, norm, and null. This increase is correlated with an increase in annotated area and annotation accuracy. Model performance in identifying the suspicious label decreased by 25% due to the decrease of 57% in the total annotated area described by this label. A summary of the model performance is given in Table 4, which shows the new prediction accuracy and the absolute change in error rate compared to Table 3. The breast tissue subset we are developing includes 3,505 annotated breast pathology slides from 296 patients. The average size of a scanned SVS file is 363 MB. The annotations are stored in an XML format. A CSV version of the annotation file is also available which provides a flat, or simple, annotation that is easy for machine learning researchers to access and interface to their systems. Each patient is identified by an anonymized medical reference number. Within each patient’s directory, one or more sessions are identified, also anonymized to the first of the month in which the sample was taken. These sessions are broken into groupings of tissue taken on that date (in this case, breast tissue). A deidentified patient report stored as a flat text file is also available. Within these slides there are a total of 16,971 total annotated regions with an average of 4.84 annotations per slide. Among those annotations, 8,035 are non-cancerous (normal, background, null, and artifact,) 6,222 are carcinogenic signs (inflammation, nonneoplastic and suspicious,) and 2,714 are cancerous labels (ductal carcinoma in situ and invasive ductal carcinoma in situ.) The individual patients are split up into three sets: train, development, and evaluation. Of the 74 cancerous patients, 20 were allotted for both the development and evaluation sets, while the remain 34 were allotted for train. The remaining 222 patients were split up to preserve the overall distribution of labels within the corpus. This was done in hope of creating control sets for comparable studies. Overall, the development and evaluation sets each have 80 patients, while the training set has 136 patients. In a related component of this project, slides from the Fox Chase Cancer Center (FCCC) Biosample Repository (https://www.foxchase.org/research/facilities/genetic-research-facilities/biosample-repository -facility) are being digitized in addition to slides provided by Temple University Hospital. This data includes 18 different types of tissue including approximately 38.5% urinary tissue and 16.5% gynecological tissue. These slides and the metadata provided with them are already anonymized and include diagnoses in a spreadsheet with sample and patient ID. We plan to release over 13,000 unannotated slides from the FCCC Corpus simultaneously with v1.0.0 of TUDP. Details of this release will also be discussed in this poster. Few digitally annotated databases of pathology samples like TUDP exist due to the extensive data collection and processing required. The breast corpus subset should be released by November 2021. By December 2021 we should also release the unannotated FCCC data. We are currently annotating urinary tract data as well. We expect to release about 5,600 processed TUH slides in this subset. We have an additional 53,000 unprocessed TUH slides digitized. Corpora of this size will stimulate the development of a new generation of deep learning technology. In clinical settings where resources are limited, an assistive diagnoses model could support pathologists’ workload and even help prioritize suspected cancerous cases. ACKNOWLEDGMENTS This material is supported by the National Science Foundation under grants nos. CNS-1726188 and 1925494. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation. REFERENCES [1] N. Shawki et al., “The Temple University Digital Pathology Corpus,” in Signal Processing in Medicine and Biology: Emerging Trends in Research and Applications, 1st ed., I. Obeid, I. Selesnick, and J. Picone, Eds. New York City, New York, USA: Springer, 2020, pp. 67 104. https://www.springer.com/gp/book/9783030368432. [2] J. Picone, T. Farkas, I. Obeid, and Y. Persidsky, “MRI: High Performance Digital Pathology Using Big Data and Machine Learning.” Major Research Instrumentation (MRI), Division of Computer and Network Systems, Award No. 1726188, January 1, 2018 – December 31, 2021. https://www. isip.piconepress.com/projects/nsf_dpath/. [3] A. Gulati et al., “Conformer: Convolution-augmented Transformer for Speech Recognition,” in Proceedings of the Annual Conference of the International Speech Communication Association (INTERSPEECH), 2020, pp. 5036-5040. https://doi.org/10.21437/interspeech.2020-3015. [4] C.-J. Wu et al., “Machine Learning at Facebook: Understanding Inference at the Edge,” in Proceedings of the IEEE International Symposium on High Performance Computer Architecture (HPCA), 2019, pp. 331–344. https://ieeexplore.ieee.org/document/8675201. [5] I. Caswell and B. Liang, “Recent Advances in Google Translate,” Google AI Blog: The latest from Google Research, 2020. [Online]. Available: https://ai.googleblog.com/2020/06/recent-advances-in-google-translate.html. [Accessed: 01-Aug-2021]. [6] V. Khalkhali, N. Shawki, V. Shah, M. Golmohammadi, I. Obeid, and J. Picone, “Low Latency Real-Time Seizure Detection Using Transfer Deep Learning,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 2021, pp. 1 7. https://www.isip. piconepress.com/publications/conference_proceedings/2021/ieee_spmb/eeg_transfer_learning/. [7] J. Picone, T. Farkas, I. Obeid, and Y. Persidsky, “MRI: High Performance Digital Pathology Using Big Data and Machine Learning,” Philadelphia, Pennsylvania, USA, 2020. https://www.isip.piconepress.com/publications/reports/2020/nsf/mri_dpath/. [8] I. Hunt, S. Husain, J. Simons, I. Obeid, and J. Picone, “Recent Advances in the Temple University Digital Pathology Corpus,” in Proceedings of the IEEE Signal Processing in Medicine and Biology Symposium (SPMB), 2019, pp. 1–4. https://ieeexplore.ieee.org/document/9037859. [9] A. P. Martinez, C. Cohen, K. Z. Hanley, and X. (Bill) Li, “Estrogen Receptor and Cytokeratin 5 Are Reliable Markers to Separate Usual Ductal Hyperplasia From Atypical Ductal Hyperplasia and Low-Grade Ductal Carcinoma In Situ,” Arch. Pathol. Lab. Med., vol. 140, no. 7, pp. 686–689, Apr. 2016. https://doi.org/10.5858/arpa.2015-0238-OA. 

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