The incorporation of high‐performance optoelectronic devices into photonic neuromorphic processors can substantially accelerate computationally intensive matrix multiplication operations in machine learning (ML) algorithms. However, the conventional designs of individual devices and system are largely disconnected, and the system optimization is limited to the manual exploration of a small design space. Here, a device‐system end‐to‐end design methodology is reported to optimize a free‐space optical general matrix multiplication (GEMM) hardware accelerator by engineering a spatially reconfigurable array made from chalcogenide phase change materials. With a highly parallelized integrated hardware emulator with experimental information, the design of unit device to directly optimize GEMM calculation accuracy is achieved by exploring a large parameter space through reinforcement learning algorithms, including deep Q‐learning neural network, Bayesian optimization, and their cascaded approach. The algorithm‐generated physical quantities show a clear correlation between system performance metrics and device specifications. Furthermore, physics‐aware training approaches are employed to deploy optimized hardware to the tasks of image classification, materials discovery, and a closed‐loop design of optical ML accelerators. The demonstrated framework offers insights into the end‐to‐end and co‐design of optoelectronic devices and systems with reduced human supervision and domain knowledge barriers.
Differentiable Compound Optics and Processing Pipeline Optimization for End-to-end Camera Design
Most modern commodity imaging systems we use directly for photography—or indirectly rely on for downstream applications—employ optical systems of multiple lenses that must balance deviations from perfect optics, manufacturing constraints, tolerances, cost, and footprint. Although optical designs often have complex interactions with downstream image processing or analysis tasks, today’s compound optics are designed in isolation from these interactions. Existing optical design tools aim to minimize optical aberrations, such as deviations from Gauss’ linear model of optics, instead of application-specific losses, precluding joint optimization with hardware image signal processing (ISP) and highly parameterized neural network processing. In this article, we propose an optimization method for compound optics that lifts these limitations. We optimize entire lens systems jointly with hardware and software image processing pipelines, downstream neural network processing, and application-specific end-to-end losses. To this end, we propose a learned, differentiable forward model for compound optics and an alternating proximal optimization method that handles function compositions with highly varying parameter dimensions for optics, hardware ISP, and neural nets. Our method integrates seamlessly atop existing optical design tools, such as Zemax . We can thus assess our method across many camera system designs and end-to-end applications. We validate our approach in an automotive camera optics setting—together with hardware ISP post processing and detection—outperforming classical optics designs for automotive object detection and traffic light state detection. For human viewing tasks, we optimize optics and processing pipelines for dynamic outdoor scenarios and dynamic low-light imaging. We outperform existing compartmentalized design or fine-tuning methods qualitatively and quantitatively, across all domain-specific applications tested.
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- Award ID(s):
- 2047359
- NSF-PAR ID:
- 10301671
- Date Published:
- Journal Name:
- ACM Transactions on Graphics
- Volume:
- 40
- Issue:
- 2
- ISSN:
- 0730-0301
- Page Range / eLocation ID:
- 1 to 19
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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Abstract Motivation Multiple sequence alignments (MSAs) of homologous sequences contain information on structural and functional constraints and their evolutionary histories. Despite their importance for many downstream tasks, such as structure prediction, MSA generation is often treated as a separate pre-processing step, without any guidance from the application it will be used for.
Results Here, we implement a smooth and differentiable version of the Smith–Waterman pairwise alignment algorithm that enables jointly learning an MSA and a downstream machine learning system in an end-to-end fashion. To demonstrate its utility, we introduce SMURF (Smooth Markov Unaligned Random Field), a new method that jointly learns an alignment and the parameters of a Markov Random Field for unsupervised contact prediction. We find that SMURF learns MSAs that mildly improve contact prediction on a diverse set of protein and RNA families. As a proof of concept, we demonstrate that by connecting our differentiable alignment module to AlphaFold2 and maximizing predicted confidence, we can learn MSAs that improve structure predictions over the initial MSAs. Interestingly, the alignments that improve AlphaFold predictions are self-inconsistent and can be viewed as adversarial. This work highlights the potential of differentiable dynamic programming to improve neural network pipelines that rely on an alignment and the potential dangers of optimizing predictions of protein sequences with methods that are not fully understood.
Availability and implementation Our code and examples are available at: https://github.com/spetti/SMURF.
Supplementary information Supplementary data are available at Bioinformatics online.
- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Journal Article:
- https://doi.org/10.1145/3446791
