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1. Ecology and life history predict avian nest success in the global tropics

   https://doi.org/10.1073/pnas.2402652121  

   Smart, Zachariah Fox; Downing, Philip A; Austin, Suzanne H; Greeney, Harold F; Londoño, Gustavo A; Nahid, Mominul I; Robinson, W Douglas; Riehl, Christina (November 2024, Proceedings of the National Academy of Sciences)

   Nest predation rates critically influence avian biodiversity and evolution. In the north temperate zone, increased nest failure along edges of forest fragments is hypothesized to play a major role in the disappearance of bird species from disturbed landscapes. However, we lack comprehensive syntheses from tropical latitudes, where biodiversity is highest and increasingly threatened by habitat fragmentation and disturbance. We assembled data from five decades of field studies across the global tropics (1,112 populations of 661 species) and used phylogenetic models to evaluate proposed predictors of nest success. We found significant effects of several traits, including adult body mass and nest architecture. Contrary to results from many temperate locations, anthropogenic habitat disruption did not consistently reduce nest success; in fact, raw nest success rates were lower in large tracts of primary forest than in disturbed or fragmented landscapes. Follow-up analyses within species, using a subset of 76 species for which we had estimates of nest survival in habitats with different levels of disruption, confirmed that neither disturbance nor fragmentation significantly influenced nest success. These results suggest that nest predation alone cannot explain observed declines in avian biodiversity in tropical forest fragments, raising new questions about the demographic processes that drive extinction in the tropics. 

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2. Three‐Dimensional Habitat Structure Drives Avian Functional and Trait Diversity Across North America

   https://doi.org/10.1002/ece3.70988  

   Sweeney, Colin P; Peterman, William; Zhao, Kaiguang; Goodell, Karen; Zuckerberg, Benjamin; Jarzyna, Marta A (April 2025, Ecology and Evolution)

   ABSTRACT Understanding how three‐dimensional (3D) habitat structure drives biodiversity patterns is key to predicting how habitat alteration and loss will affect species and community‐level patterns in the future. To date, few studies have contrasted the effects of 3D habitat composition with those of 3D habitat configuration on biodiversity, with existing investigations often limited to measures of taxonomic diversity (i.e., species richness). Here, we examined the influence of Light Detecting and Ranging (LiDAR)‐derived 3D habitat structure–both its composition and configuration–on multiple facets of bird diversity. Specifically, we used data from the National Ecological Observatory Network (NEON) to test the associations between 11 measures of 3D habitat structure and avian species richness, functional and trait diversity, and phylogenetic diversity. We found that 3D habitat structure was the most consistent predictor of avian functional and trait diversity, with little to no effect on species richness or phylogenetic diversity. Functional diversity and individual trait characteristics were strongly associated with both 3D habitat composition and configuration, but the magnitude and the direction of the effects varied across the canopy, subcanopy, midstory, and understory vertical strata. Our findings suggest that 3D habitat structure influences avian diversity through its effects on traits. By examining the effects of multiple aspects of habitat structure on multiple facets of avian diversity, we provide a broader framework for future investigations on habitat structure. 

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3. Active restoration accelerates recovery of tropical forest bird assemblages over two decades

   https://doi.org/10.1016/j.biocon.2024.110593  

   Joyce, Francis H; Rosales, Juan Abel; Holl, Karen D; Zahawi, Rakan A; Bui, An; Reid, J Leighton (May 2024, Biological Conservation)

   Choosing effective methods to restore habitat for the diverse faunal assemblages of tropical forests is hampered by lack of long-term data comparing multiple restoration treatments. We conducted area counts of bird assemblages over 12 years (~5–17 years since restoration) in a blocked experiment with two active planted treatments (tree plantations and applied nucleation) and a passive restoration treatment (natural regeneration) replicated at 11 sites in Costa Rica. We also surveyed six pastures and five remnant forest sites to assess recovery of avian species richness, composition, forest specialists, and range-restricted species in restoration plots relative to degraded and reference systems. Restoration treatments showed increased resemblance of avian assemblages to remnant forest over time. Applied nucleation proved equally effective as plantation, despite a reduced planted area, whereas natural regeneration recovered more slowly. Assemblage-level trends in avian species richness and compositional similarity to reference forest are underpinned by reductions in use by pasture birds and by gradual increases in richness of forest-affiliated species. Because forest-affiliated species tend to have narrower distributions than the open-country species they replace, forest restoration can reduce biotic homogenization at the local scale. Restoration practitioners should consider applied nucleation as an alternative to standard plantations if seeking rapid recovery of bird assemblages. However, the ecological return on investment from natural regeneration increases over a couple of decades. Managers should monitor trends in forest-affiliated and rangerestricted species to track the recovery of the full avian assemblages, since coarse metrics like species richness and overall compositional similarity may plateau relatively quickly 

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4. Assessing the role of habitat and species interactions in the population decline and detection bias of Neotropical leaf litter frogs in and around La Selva Biological Station, Costa Rica

   https://doi.org/10.3897/neotropical.14.e37526  

   Vera Alvarez, Maria D.; Fernandez, Christopher; Cove, Michael V. (July 2019, Neotropical Biology and Conservation)

   null (Ed.)

   Worldwide, amphibian populations have been declining rapidly. This decline can be attributed to many factors including climate change, pesticide exposure, and emerging infectious diseases, among other important factors, but few studies have examined the influence of species interactions. In this study, we examined how habitat factors and co-occurring avian and mammalian species, as well as humans, exert direct and indirect effects on Neotropical amphibian population dynamics. We further examined how these habitat and species interactions could affect our ability to reliably detect amphibian presence to robustly estimate population trends. We conducted amphibian visual encounter surveys at 26 randomly selected sites in the La Selva Biological Station, in northeastern Costa Rica, as well as 26 sites across five additional forest fragments in the region. Furthermore, we used camera traps to collect data on avian and mammalian communities and human visitation at those amphibian survey plots. From these data, we were able to estimate species occupancy probabilities for leaf litter frogs across sites and their relationships to habitat and interspecific species interaction covariates. We also conducted an experiment with plastic model frogs to estimate detection probabilities when a population is known to occur at a site with certainty. Our results suggested that strawberry poison dart frog ( Oophagapumilio ) occupancy was positively related to secondary forest and their detection was negatively related to increasing air temperatures at the times of the surveys. Leaf litter frog occupancy was negatively related to core La Selva sites and human detections at sites, yet their detection was positively related to human trail presence, which might be related to reduced leaf litter cover due to heavy trampling. Our experimental surveys suggested that Neotropical leaf litter frog communities are difficult to detect when present and future studies should explicitly account for this detection bias to effectively monitor population trends. 

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5. Diversity – volume relationships: adding structural arrangement and volume to species – area relationships across forest macrosystems

   https://doi.org/10.1111/ecog.06723  

   LaRue, Elizabeth A.; Downing, Anna G.; Saucedo, Sheila; Rocha, Arturo; Zesati, Sergio A.; Mata‐Silva, Vicente; Harvey, Michael G. (October 2023, Ecography)

   The species – area relationship (SAR) is a common pattern in which diversity increases with the area sampled, but ecosystems are three‐dimensional (3D) and diversity – volume relationships (DVRs) may exist in ecosystems that vary substantially in their vegetation volume. We tested whether forest vegetation volume, as a 3D extension of area in SARs, was a significant predictor of taxonomic (species) and structural (arrangement) diversity in five groups of organisms across the National Ecological Observatory Network (NEON). Vegetation volume and four structural arrangement metrics within the area of NEON plots were measured using NEON's discrete return lidar. Species richness was measured as the number of species within the respective NEON plot sampling area for understory plants, trees, breeding land birds, small mammals, and ground beetles. We found that volume negatively predicted understory plants and positively predicted tree and beetle species richness across the USA forest macrosystem, but not bird and small mammal species richness. Furthermore, volume was a significant predictor of several metrics that describe the internal and external heterogeneity of vegetation in forests (structural arrangement) within the ecosystem across the USA forest macrosystem. There were several significant within site‐level relationships, but not at all sites, between volume and species richness or structural arrangement in organism groups. Our study indicates that previous work that has focused on a 2D conceptualization of habitat can be expanded to 3D habitat space, but that the strength and the positive or negative direction of DVRs may vary taxonomically or geographically. 

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