skip to main content
US FlagAn official website of the United States government
dot gov icon
Official websites use .gov
A .gov website belongs to an official government organization in the United States.
https lock icon
Secure .gov websites use HTTPS
A lock ( lock ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.


Title: Iterative Forecasting Improves Near-Term Predictions of Methane Ebullition Rates
Near-term, ecological forecasting with iterative model refitting and uncertainty partitioning has great promise for improving our understanding of ecological processes and the predictive skill of ecological models, but to date has been infrequently applied to predict biogeochemical fluxes. Bubble fluxes of methane (CH 4 ) from aquatic sediments to the atmosphere (ebullition) dominate freshwater greenhouse gas emissions, but it remains unknown how best to make robust near-term CH 4 ebullition predictions using models. Near-term forecasting workflows have the potential to address several current challenges in predicting CH 4 ebullition rates, including: development of models that can be applied across time horizons and ecosystems, identification of the timescales for which predictions can provide useful information, and quantification of uncertainty in predictions. To assess the capacity of near-term, iterative forecasting workflows to improve ebullition rate predictions, we developed and tested a near-term, iterative forecasting workflow of CH 4 ebullition rates in a small eutrophic reservoir throughout one open-water period. The workflow included the repeated updating of a CH 4 ebullition forecast model over time with newly-collected data via iterative model refitting. We compared the CH 4 forecasts from our workflow to both alternative forecasts generated without iterative model refitting and a persistence null model. Our forecasts with iterative model refitting estimated CH 4 ebullition rates up to 2 weeks into the future [RMSE at 1-week ahead = 0.53 and 0.48 log e (mg CH 4 m −2 d −1 ) at 2-week ahead horizons]. Forecasts with iterative model refitting outperformed forecasts without refitting and the persistence null model at both 1- and 2-week forecast horizons. Driver uncertainty and model process uncertainty contributed the most to total forecast uncertainty, suggesting that future workflow improvements should focus on improved mechanistic understanding of CH 4 models and drivers. Altogether, our study suggests that iterative forecasting improves week-to-week CH 4 ebullition predictions, provides insight into predictability of ebullition rates into the future, and identifies which sources of uncertainty are the most important contributors to the total uncertainty in CH 4 ebullition predictions.  more » « less
Award ID(s):
1737424 1753639 1933016 1926050 1933102
PAR ID:
10309584
Author(s) / Creator(s):
; ; ; ;
Date Published:
Journal Name:
Frontiers in Environmental Science
Volume:
9
ISSN:
2296-665X
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. Abstract Ecosystems around the globe are experiencing changes in both the magnitude and fluctuations of environmental conditions due to land use and climate change. In response, ecologists are increasingly using near‐term, iterative ecological forecasts to predict how ecosystems will change in the future. To date, many near‐term, iterative forecasting systems have been developed using high temporal frequency (minute to hourly resolution) data streams for assimilation. However, this approach may be cost‐prohibitive or impossible for forecasting ecological variables that lack high‐frequency sensors or have high data latency (i.e., a delay before data are available for modeling after collection). To explore the effects of data assimilation frequency on forecast skill, we developed water temperature forecasts for a eutrophic drinking water reservoir and conducted data assimilation experiments by selectively withholding observations to examine the effect of data availability on forecast accuracy. We used in situ sensors, manually collected data, and a calibrated water quality ecosystem model driven by forecasted weather data to generate future water temperature forecasts using Forecasting Lake and Reservoir Ecosystems (FLARE), an open source water quality forecasting system. We tested the effect of daily, weekly, fortnightly, and monthly data assimilation on the skill of 1‐ to 35‐day‐ahead water temperature forecasts. We found that forecast skill varied depending on the season, forecast horizon, depth, and data assimilation frequency, but overall forecast performance was high, with a mean 1‐day‐ahead forecast root mean square error (RMSE) of 0.81°C, mean 7‐day RMSE of 1.15°C, and mean 35‐day RMSE of 1.94°C. Aggregated across the year, daily data assimilation yielded the most skillful forecasts at 1‐ to 7‐day‐ahead horizons, but weekly data assimilation resulted in the most skillful forecasts at 8‐ to 35‐day‐ahead horizons. Within a year, forecasts with weekly data assimilation consistently outperformed forecasts with daily data assimilation after the 8‐day forecast horizon during mixed spring/autumn periods and 5‐ to 14‐day‐ahead horizons during the summer‐stratified period, depending on depth. Our results suggest that lower frequency data (i.e., weekly) may be adequate for developing accurate forecasts in some applications, further enabling the development of forecasts broadly across ecosystems and ecological variables without high‐frequency sensor data. 
    more » « less
  2. Abstract Near‐term, iterative ecological forecasts can be used to help understand and proactively manage ecosystems. To date, more forecasts have been developed for aquatic ecosystems than other ecosystems worldwide, likely motivated by the pressing need to conserve these essential and threatened ecosystems and increasing the availability of high‐frequency data. Forecasters have implemented many different modeling approaches to forecast freshwater variables, which have demonstrated promise at individual sites. However, a comprehensive analysis of the performance of varying forecast models across multiple sites is needed to understand broader controls on forecast performance. Forecasting challenges (i.e., community‐scale efforts to generate forecasts while also developing shared software, training materials, and best practices) present a useful platform for bridging this gap to evaluate how a range of modeling methods perform across axes of space, time, and ecological systems. Here, we analyzed forecasts from the aquatics theme of the National Ecological Observatory Network (NEON) Forecasting Challenge hosted by the Ecological Forecasting Initiative. Over 100,000 probabilistic forecasts of water temperature and dissolved oxygen concentration for 1–30 days ahead across seven NEON‐monitored lakes were submitted in 2023. We assessed how forecast performance varied among models with different structures, covariates, and sources of uncertainty relative to baseline null models. A similar proportion of forecast models were skillful across both variables (34%–40%), although more individual models outperformed the baseline models in forecasting water temperature (10 models out of 29) than dissolved oxygen (6 models out of 15). These top performing models came from a range of classes and structures. For water temperature, we found that forecast skill degraded with increases in forecast horizons, process‐based models, and models that included air temperature as a covariate generally exhibited the highest forecast performance, and that the most skillful forecasts often accounted for more sources of uncertainty than the lower performing models. The most skillful forecasts were for sites where observations were most divergent from historical conditions (resulting in poor baseline model performance). Overall, the NEON Forecasting Challenge provides an exciting opportunity for a model intercomparison to learn about the relative strengths of a diverse suite of models and advance our understanding of freshwater ecosystem predictability. 
    more » « less
  3. Abstract Near‐term ecological forecasts provide resource managers advance notice of changes in ecosystem services, such as fisheries stocks, timber yields, or water quality. Importantly, ecological forecasts can identify where there is uncertainty in the forecasting system, which is necessary to improve forecast skill and guide interpretation of forecast results. Uncertainty partitioning identifies the relative contributions to total forecast variance introduced by different sources, including specification of the model structure, errors in driver data, and estimation of current states (initial conditions). Uncertainty partitioning could be particularly useful in improving forecasts of highly variable cyanobacterial densities, which are difficult to predict and present a persistent challenge for lake managers. As cyanobacteria can produce toxic and unsightly surface scums, advance warning when cyanobacterial densities are increasing could help managers mitigate water quality issues. Here, we fit 13 Bayesian state‐space models to evaluate different hypotheses about cyanobacterial densities in a low nutrient lake that experiences sporadic surface scums of the toxin‐producing cyanobacterium,Gloeotrichia echinulata. We used data from several summers of weekly cyanobacteria samples to identify dominant sources of uncertainty for near‐term (1‐ to 4‐week) forecasts ofG. echinulatadensities. Water temperature was an important predictor of cyanobacterial densities during model fitting and at the 4‐week forecast horizon. However, no physical covariates improved model performance over a simple model including the previous week's densities in 1‐week‐ahead forecasts. Even the best fit models exhibited large variance in forecasted cyanobacterial densities and did not capture rare peak occurrences, indicating that significant explanatory variables when fitting models to historical data are not always effective for forecasting. Uncertainty partitioning revealed that model process specification and initial conditions dominated forecast uncertainty. These findings indicate that long‐term studies of different cyanobacterial life stages and movement in the water column as well as measurements of drivers relevant to different life stages could improve model process representation of cyanobacteria abundance. In addition, improved observation protocols could better define initial conditions and reduce spatial misalignment of environmental data and cyanobacteria observations. Our results emphasize the importance of ecological forecasting principles and uncertainty partitioning to refine and understand predictive capacity across ecosystems. 
    more » « less
  4. Abstract Near‐term iterative forecasting is a powerful tool for ecological decision support and has the potential to transform our understanding of ecological predictability. However, to this point, there has been no cross‐ecosystem analysis of near‐term ecological forecasts, making it difficult to synthesize diverse research efforts and prioritize future developments for this emerging field. In this study, we analyzed 178 near‐term (≤10‐yr forecast horizon) ecological forecasting papers to understand the development and current state of near‐term ecological forecasting literature and to compare forecast accuracy across scales and variables. Our results indicated that near‐term ecological forecasting is widespread and growing: forecasts have been produced for sites on all seven continents and the rate of forecast publication is increasing over time. As forecast production has accelerated, some best practices have been proposed and application of these best practices is increasing. In particular, data publication, forecast archiving, and workflow automation have all increased significantly over time. However, adoption of proposed best practices remains low overall: for example, despite the fact that uncertainty is often cited as an essential component of an ecological forecast, only 45% of papers included uncertainty in their forecast outputs. As the use of these proposed best practices increases, near‐term ecological forecasting has the potential to make significant contributions to our understanding of forecastability across scales and variables. In this study, we found that forecastability (defined here as realized forecast accuracy) decreased in predictable patterns over 1–7 d forecast horizons. Variables that were closely related (i.e., chlorophyll and phytoplankton) displayed very similar trends in forecastability, while more distantly related variables (i.e., pollen and evapotranspiration) exhibited significantly different patterns. Increasing use of proposed best practices in ecological forecasting will allow us to examine the forecastability of additional variables and timescales in the future, providing a robust analysis of the fundamental predictability of ecological variables. 
    more » « less
  5. Abstract Freshwater ecosystems are experiencing greater variability due to human activities, necessitating new tools to anticipate future water quality. In response, we developed and deployed a real‐time iterative water temperature forecasting system (FLARE—Forecasting Lake And Reservoir Ecosystems). FLARE is composed of water temperature and meteorology sensors that wirelessly stream data, a data assimilation algorithm that uses sensor observations to update predictions from a hydrodynamic model and calibrate model parameters, and an ensemble‐based forecasting algorithm to generate forecasts that include uncertainty. Importantly, FLARE quantifies the contribution of different sources of uncertainty (driver data, initial conditions, model process, and parameters) to each daily forecast of water temperature at multiple depths. We applied FLARE to Falling Creek Reservoir (Vinton, Virginia, USA), a drinking water supply, during a 475‐day period encompassing stratified and mixed thermal conditions. Aggregated across this period, root mean square error (RMSE) of daily forecasted water temperatures was 1.13°C at the reservoir's near‐surface (1.0 m) for 7‐day ahead forecasts and 1.62°C for 16‐day ahead forecasts. The RMSE of forecasted water temperatures at the near‐sediments (8.0 m) was 0.87°C for 7‐day forecasts and 1.20°C for 16‐day forecasts. FLARE successfully predicted the onset of fall turnover 4–14 days in advance in two sequential years. Uncertainty partitioning identified meteorology driver data as the dominant source of uncertainty in forecasts for most depths and thermal conditions, except for the near‐sediments in summer, when model process uncertainty dominated. Overall, FLARE provides an open‐source system for lake and reservoir water quality forecasting to improve real‐time management. 
    more » « less