Type I and II halogen bonds are well-recognized motifs that commonly occur within crystals. Quantum calculations are applied to examine whether such geometries might occur in their closely related chalcogen bond cousins. Homodimers are constructed of the R1R2C=Y and R1R2Y monomers, wherein Y represents a chalcogen atom, S, Se, or Te; R1 and R2 refer to either H or F. A Type II (T2) geometry wherein the lone pair of one Y is closely aligned with a σ-hole of its partner represents a stable arrangement for all except YH2, although not all such structures are true minima. The symmetric T1 geometry in which each Y atom serves as both electron donor and acceptor in the chalcogen bond is slightly higher in energy for R1R2C=Y, but the reverse is true for R1R2Y. Due to their deeper σ-holes, the latter molecules engage in stronger chalcogen bonds than do the former, with the exception of H2Y, whose dimers are barely bound. The interaction energies rise as the Y atom grows larger: S < Se < Te. 
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                            Participation of S and Se in hydrogen and chalcogen bonds
                        
                    
    
            This article reviews the history and the current state of knowledge concerning the ability of the heavy chalcogen atoms S and Se, and to some extent Te, to participate in a H-bond as either proton donor or acceptor. These atoms are nearly as effective proton acceptors as O, and only slightly weaker as donor. They can also participate in chalcogen bonds where they act as electron acceptors from a nucleophile. These bonds rapidly strengthen as the chalcogen atom becomes larger: S < Se < Te, or if they are surrounded by electron-withdrawing substituents, and can exceed that of many types of H-bonds. Experimental and computational evidence indicates that both H-bonds and chalcogen bonds involving S and Se occur widely in chemical and biological systems, and play an active role in structure and function. 
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                            - Award ID(s):
- 1954310
- PAR ID:
- 10326169
- Date Published:
- Journal Name:
- CrystEngComm
- Volume:
- 23
- Issue:
- 39
- ISSN:
- 1466-8033
- Page Range / eLocation ID:
- 6821 to 6837
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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