This paper presents a tool-pose-informed variable center morphological polar transform to enhance segmentation of endoscopic images. The representation, while not loss-less, transforms rigid tool shapes into morphologies consistently more rectangular that may be more amenable to image segmentation networks. The proposed method was evaluated using the U-Net convolutional neural network, and the input images from endoscopy were represented in one of the four different coordinate formats (1) the original rectangular image representation, (2) the morphological polar coordinate transform, (3) the proposed variable center transform about the tool-tip pixel and (4) the proposed variable center transform about the tool vanishing point pixel. Previous work relied on the observations that endoscopic images typically exhibit unused border regions with content in the shape of a circle (since the image sensor is designed to be larger than the image circle to maximize available visual information in the constrained environment) and that the region of interest (ROI) was most ideally near the endoscopic image center. That work sought an intelligent method for, given an input image, carefully selecting between methods (1) and (2) for best image segmentation prediction. In this extension, the image center reference constraint for polar transformation in method (2) is relaxed via the development of a variable center morphological transformation. Transform center selection leads to different spatial distributions of image loss, and the transform-center location can be informed by robot kinematic model and endoscopic image data. In particular, this work is examined using the tool-tip and tool vanishing point on the image plane as candidate centers. The experiments were conducted for each of the four image representations using a data set of 8360 endoscopic images from real sinus surgery. The segmentation performance was evaluated with standard metrics, and some insight about loss and tool location effects on performance are provided. Overall, the results are promising, showing that selecting a transform center based on tool shape features using the proposed method can improve segmentation performance.
Enhanced U-Net Tool Segmentation using Hybrid Coordinate Representations of Endoscopic Images
This paper presents an approach to enhanced endoscopic tool segmentation combining separate pathways utilizing input images in two different coordinate representations. The proposed method examines U-Net convolutional neural networks with input endoscopic images represented via (1) the original rectangular coordinate format alongside (2) a morphological polar coordinate transformation. To maximize information and the breadth of the endoscope frustrum, imaging sensors are oftentimes larger than the image circle. This results in unused border regions. Ideally, the region of interest is proximal to the image center. The above two observations formed the basis for the morphological polar transformation pathway as an augmentation to typical rectangular input image representations. Results indicate that neither of the two investigated coordinate representations consistently yielded better segmentation performance as compared to the other. Improved segmentation can be achieved with a hybrid approach that carefully selects which of the two pathways to be used for individual input images. Towards that end, two binary classifiers were trained to identify, given an input endoscopic image, which of the two coordinate representation segmentation pathways (rectangular or polar), would result in better segmentation performance. Results are promising and suggest marked improvements using a hybrid pathway selection approach compared to either alone. The experiment used to evaluate the proposed hybrid method utilized a dataset consisting of 8360 endoscopic images from real surgery and evaluated segmentation performance with Dice coefficient and Intersection over Union. The results suggest that on-the-fly polar transformation for tool segmentation is useful when paired with the proposed hybrid tool-segmentation approach.
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- Award ID(s):
- 2101107
- NSF-PAR ID:
- 10326946
- Date Published:
- Journal Name:
- 2021 International Symposium on Medical Robotics (ISMR)
- Page Range / eLocation ID:
- 1 to 7
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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- Free Publicly Accessible Full Text
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Accepted Manuscript1.0
- Conference Paper:
- https://doi.org/10.1109/ISMR48346.2021.9661519
