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1. Investigating the Relationship between Nitrate, Total Dissolved Nitrogen, and Phosphate with Abundance of Pathogenic Vibrios and Harmful Algal Blooms in Rehoboth Bay, Delaware

   https://doi.org/10.1128/aem.00356-22  

   Rosales, Detbra ; Ellett, Ava ; Jacobs, John ; Ozbay, Gulnihal ; Parveen, Salina ; Pitula, Joseph ( July 2022 , Applied and Environmental Microbiology)

   Dozois, Charles M. (Ed.)

   ABSTRACT Vibrio spp. and phytoplankton are naturally abundant in marine environments. Recent studies have suggested that the co-occurrence of phytoplankton and the pathogenic bacterium Vibrio parahaemolyticus is due to shared ecological factors, such as nutrient requirements. We compared these communities at two locations in the Delaware Inland Bays, representing a site with high anthropogenic inputs (Torquay Canal) and a less developed area (Sloan Cove). In 2017 to 2018, using light microscopy, we were able to identify the presence of many bloom-forming algal species, such as Karlodinium veneficum , Dinophysis acuminata , Heterosigma akashiwo , and Chattonella subsalsa . Dinoflagellate biomass was higher at Torquay Canal than that at Sloan Cove. D. acuminata and Chloromorum toxicum were found only at Torquay Canal and were not observed in Sloan Cove. Most probable number real-time PCR revealed V. parahaemolyticus and Vibrio vulnificus in environmental samples. The abundance of vibrios and their virulence genes varied between sites, with a significant association between total dissolved nitrogen (TDN), PO 4 − , total dissolved phosphorus (TDP), and pathogenic markers. A generalized linear model revealed that principal component 1 of environmental factors (temperature, dissolved oxygen, salinity, TDN, PO 4 − , TDP, NO 3 :NO 2 , NO 2 − , and NH 4 + ) was the best at detecting total ( tlh+ ) V. parahaemolyticus , suggesting that they are the prime drivers for the growth and distribution of pathogenic Vibrio spp. IMPORTANCE Vibrio-associated illnesses have been expanding globally over the past several decades (A. Newton, M. Kendall, D. J. Vugia, O. L. Henao, and B. E. Mahon, Clin Infect Dis 54:S391–S395, 2012, https://doi.org/10.1093/cid/cis243 ). Many studies have linked this expansion with an increase in global temperature (J. Martinez-Urtaza, B. C. John, J. Trinanes, and A. DePaola, Food Res Int 43:10, 2010, https://doi.org/10.1016/j.foodres.2010.04.001 ; L. Vezzulli, R. R. Colwell, and C. Pruzzo, Microb Ecol 65:817–825, 2013, https://doi.org/10.1007/s00248-012-0163-2 ; R. N. Paranjpye, W. B. Nilsson, M. Liermann, and E. D. Hilborn, FEMS Microbiol Ecol 91:fiv121, 2015, https://doi.org/10.1093/femsec/fiv121 ). Temperature and salinity are the two major factors affecting the distribution of Vibrio spp. (D. Ceccarelli and R. R. Colwell, Front Microbiol 5:256, 2014, https://doi.org/10.3389/fmicb.2014.00256 ). However, Vibrio sp. abundance can also be affected by nutrient load and marine plankton blooms (V. J. McKenzie and A. R. Townsend, EcoHealth 4:384–396, 2007; L. Vezzulli, C. Pruzzo, A. Huq, and R. R. Colwell, Environ Microbiol Rep 2:27–33, 2010, https://doi.org/10.1111/j.1758-2229.2009.00128.x ; S. Liu, Z. Jiang, Y. Deng, Y. Wu, J. Zhang, et al. Microbiologyopen 7:e00600, 2018, https://doi.org/10.1002/mbo3.600 ). The expansion of Vibrio spp. in marine environments calls for a deeper understanding of the biotic and abiotic factors that play a role in their abundance. We observed that pathogenic Vibrio spp. were most abundant in areas that favor the proliferation of harmful algal bloom (HAB) species. These results can inform managers, researchers, and oyster growers on factors that can influence the growth and distribution of pathogenic Vibrio spp. in the Delaware Inland Bays. 

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2. Seasonal Feeding Behavior of Aquaculture Eastern Oysters (Crassostrea virginica) in the Mid-Atlantic

   https://doi.org/10.1007/s12237-023-01293-9  

   Barr, Janine M. ; Munroe, Daphne ; Rose, Julie M. ; Calvo, Lisa ; Cheng, Kurt M. ; Bayer, Skylar ; Kreeger, Danielle ( November 2023 , Estuaries and Coasts)

   The Eastern Oyster (Crassostrea virginica) is a commercially important aquaculture species and food resource along the Atlantic and Gulf coasts of the USA. In addition to its economic value, oyster aquaculture provides ecological value such as water quality improvement. Oyster filtration is highly variable as filtration behavior is influenced by environmental conditions, oyster size, and oyster energetic demands. However, average rates generated in laboratory experiments are often used to estimate the ecological impact of oyster filtration, and there is a need for field-based, farm-specific estimates of filtration that account for this variation. In this study, field experiments were conducted between September 2020 and September 2021 to estimate seasonal oyster filtration physiology at oyster farms in three different bays in the Mid-Atlantic (Barnegat Bay and Delaware Bay in New Jersey and Rehoboth Bay in Delaware). The physiological activity of oysters at each farm varied such that oysters at Barnegat Bay were the most active and oysters at Rehoboth Bay were the least active. Seasonal physiological trends were observed such that filtration behavior generally increased in warmer months. An increase in physiological activity across all farms was associated with an increase in salinity and temperature, but physiological activity at each farm was associated with a different suite of environmental variables including total particulate matter and the organic content of seston. This study provides a robust dataset which can be incorporated into models estimating ecological filtration rates in the Mid-Atlantic and adds to the growing body of evidence supporting bivalve aquaculture as a nutrient reduction strategy.

    

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3. Risk of Facilitated Invasion Depends Upon Invader Identity, Not Environmental Severity, Along an Aridity Gradient

   https://doi.org/10.3389/fevo.2022.886690  

   Lucero, Jacob E. ; Faist, Akasha M. ; Lortie, Christopher J. ; Callaway, Ragan M. ( May 2022 , Frontiers in Ecology and Evolution)

   Positive interactions can drive the assembly of desert plant communities, but we know little about the species-specificity of positive associations between native shrubs and invasive annual species along aridity gradients. These measures are essential for explaining, predicting, and managing community-level responses to plant invasions and environmental change. Here, we measured the intensity of spatial associations among native shrubs and the annual plant community—including multiple invasive species and their native neighbors—along an aridity gradient across the Mojave and San Joaquin Deserts, United States. Along the gradient, we sampled the abundance and species richness of invasive and native annual species using 180 pairs of shrub and open microsites. Across the gradient, the invasive annuals Bromus madritensis ssp. rubens ( B. rubens ), B. tectorum , B. diandrus, Hordeum murinum , and Brassica tournefortii were consistently more abundant under shrubs than away from shrubs, suggesting positive effects of shrubs on these species. In contrast, abundance of the invasive annual Schismus spp. was greater away from shrubs than under shrubs, suggesting negative effects of shrubs on this species. Similarly, native annual abundance (pooled) and native species richness were greater away from shrubs than under shrubs. Shrub-annual associations were not influenced by shrub size or aridity. Interestingly, we found correlative evidence that B. rubens reduced native abundance (pooled), native species richness, and exotic abundance (pooled) under, but not away from shrubs. We conclude that native shrubs have considerable potential to directly (by increasing invader abundance) and indirectly (by increasing negative impacts of invaders on neighbors) facilitate plant invasions along broad environmental gradients, but these effects may depend more upon invader identity than environmental severity. 

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4. Northeast Pacific eelgrass fish communities characterized by environmental DNA represent local diversity and show habitat specificity

   https://doi.org/10.1002/edn3.431  

   Beatty, Deanna S. ; Deen, Emma ; Gross, Collin ; Stachowicz, John J. ( July 2023 , Environmental DNA)

   Fish biodiversity is an important indicator of ecosystem health and a priority for the National Park Service in Drakes Estero, a shallow estuary within Point Reyes National Seashore, Marin County, California. However, fish diversity has yet to be described following the removal of oyster aquaculture infrastructure within Drakes Estero from 2016 to 2017. We used environmental DNA (eDNA) to characterize fish biodiversity within Drakes Estero. We amplified fish eDNA with MiFish primers and classified sequences with a 12S rRNA reference database. We identified 110 unique operational taxonomic units (OTUs, at 97% similarity) within the estuary from 40 samples across 4 sites. From these 110 OTUs, we identified 9 species and 13 taxonomic groups at the genus, family, order, or class level within the estuary. Species‐level assignments are limited by a lack of representative sequences targeted by the MiFish primers for 42% of eelgrass fishes in our region that we identified from a literature review in the Northeast Pacific (NEP) from Elkhorn Slough to Humboldt Bay. Despite this limitation, we identified some common Drakes Estero fishes with our eDNA surveys, including the three‐spined stickleback (Gasterosteus aculeatus), Pacific staghorn sculpin (Leptocottus armatus), surfperches (Embiotocidae), gobies (Gobiidae), and a hound shark (Triakidae). We also compared fish biodiversity within the estuary with that from nearby Limantour Beach, a coastal site. Limantour beach differed in community composition from Drakes Estero and was characterized by high relative abundances of anchovy (Engraulissp.) and herring (Clupeasp.). Thus, we can distinguish estuarine and non‐estuarine sites (<10 km away) with eDNA surveys. Further, eDNA surveys accounted for greater fish diversity than seine surveys conducted at one site within the estuary. Environmental DNA surveys will likely be a useful tool to monitor fish biodiversity across eelgrass estuaries in the Northeast Pacific, especially as reference databases become better populated with regional species.

    

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5. Urban aerosol chemistry at a land–water transition site during summer – Part 1: Impact of agricultural and industrial ammonia emissions

   https://doi.org/10.5194/acp-21-13051-2021  

   Balasus, Nicholas ; Battaglia Jr., Michael A. ; Ball, Katherine ; Caicedo, Vanessa ; Delgado, Ruben ; Carlton, Annmarie G. ; Hennigan, Christopher J. ( January 2021 , Atmospheric Chemistry and Physics)

   Abstract. This study characterizes the impact of the Chesapeake Bay and associated meteorological phenomena on aerosol chemistry during the second Ozone Water-Land Environmental Transition Study (OWLETS-2) field campaign, which took place from 4 June to 5 July 2018. Measurements of inorganic PM2.5 composition, gas-phase ammonia (NH3), and an array of meteorological parameters were undertaken at Hart-Miller Island (HMI), a land–water transition site just east of downtown Baltimore on the Chesapeake Bay. The observations at HMI were characterized by abnormally high NH3 concentrations (maximum of 19.3 µg m−3, average of 3.83 µg m−3), which were more than a factor of 3 higher than NH3 levels measured at the closest atmospheric Ammonia Monitoring Network (AMoN) site (approximately 45 km away). While sulfate concentrations at HMI agreed quite well with those measured at a regulatory monitoring station 45 km away, aerosol ammonium and nitrate concentrations were significantly higher, due to the ammonia-rich conditions that resulted from the elevated NH3. The high NH3 concentrations were largely due to regional agricultural emissions, including dairy farms in southeastern Pennsylvania and poultry operations in the Delmarva Peninsula (Delaware–Maryland–Virginia). Reduced NH3 deposition during transport over the Chesapeake Bay likely contributed to enhanced concentrations at HMI compared to the more inland AMoN site. Several peak NH3 events were recorded, including the maximum NH3 observed during OWLETS-2, that appear to originate from a cluster of industrial sources near downtown Baltimore. Such events were all associated with nighttime emissions and advection to HMI under low wind speeds (< 1 m s−1) and stable atmospheric conditions. Our results demonstrate the importance of industrial sources, including several that are not represented in the emissions inventory, on urban air quality. Together with our companion paper, which examines aerosol liquid water and pH during OWLETS-2, we highlight unique processes affecting urban air quality of coastal cities that are distinct from continental locations. 

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