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1. Tree resprout dynamics following fire depend on herbivory by wild ungulate herbivores

   https://doi.org/10.1111/1365-2745.13186  

   LaMalfa, Eric M. ; Kimuyu, Duncan M. ; Sensenig, Ryan L. ; Young, Truman P. ; Riginos, Corinna ; Veblen, Kari E. ; Sankaran, ed., Mahesh ( May 2019 , Journal of Ecology)

   Savanna tree cover is dynamic due to disturbances such as fire and herbivory. Frequent fires can limit a key demographic transition from sapling to adult height classes in savanna trees. Saplings may be caught in a ‘fire trap’, wherein individuals repeatedly resprout following fire top‐kill events. Saplings only rarely escape the cycle by attaining a fire‐resistant height (e.g. taller than the minimum scorch height) during fire‐free intervals.

   Large mammalian herbivores also may trap trees in shorter size classes. Browsing herbivores directly limit sapling height, while grazing herbivores such as cattle facilitate sapling growth indirectly via grass removal. Experimental studies investigating how meso‐wildlife, megaherbivores and domestic livestock affect height of resprouts following fire are rare, but necessary for fully understanding how herbivory may reinforce (or counteract) the fire trap. In our study system, interactive fire–herbivore effects on transitions from sapling (<1 m) to adult tree (>1 m) height classes may be further influenced by plant defences, such as symbiotic ants.

   We used the Kenya Long‐term Exclosure Experiment (KLEE) to investigate how post‐fire resprout size of a widespread monodominant East African tree,Acacia drepanolobiumwas influenced by (a) herbivory by different combinations of cattle, meso‐wildlife (15–1,000 kg) and megaherbivores (>1,000 kg) and (b) the presence of acacia–ant mutualists that confer tree defences. We sampled height, stem length and ant occupancy of resprouts exposed to different herbivore combinations before and after controlled burns.

   Resprout height of saplings that were short prior to fire (<1 m) was reduced primarily by meso‐wildlife. Negative effects of elephants on post‐fire resprout height increased with pre‐fire tree size, suggesting that resprouts of the tallest trees (with the greatest potential to escape the fire trap cycle) were preferentially browsed and reduced in height by elephants. There were no significant cattle effects.

   Synthesis. We provide experimental evidence for two potential pathways through which large herbivores exert control over sapling escape from the fire trap: (a) post‐fire meso‐wildlife browsing of short (<1 m) resprouts and (b) elephant browsing of the largest size class of resprouts, which would otherwise be most likely to escape the fire trap.

    

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2. Camtrap DP: an open standard for the FAIR exchange and archiving of camera trap data

   https://doi.org/10.1002/rse2.374  

   Bubnicki, Jakub W. ; Norton, Ben ; Baskauf, Steven J. ; Bruce, Tom ; Cagnacci, Francesca ; Casaer, Jim ; Churski, Marcin ; Cromsigt, Joris P. G. M. ; Farra, Simone Dal ; Fiderer, Christian ; et al ( December 2023 , Remote Sensing in Ecology and Conservation)

   Camera trapping has revolutionized wildlife ecology and conservation by providing automated data acquisition, leading to the accumulation of massive amounts of camera trap data worldwide. Although management and processing of camera trap‐derived Big Data are becoming increasingly solvable with the help of scalable cyber‐infrastructures, harmonization and exchange of the data remain limited, hindering its full potential. There is currently no widely accepted standard for exchanging camera trap data. The only existing proposal, “Camera Trap Metadata Standard” (CTMS), has several technical shortcomings and limited adoption. We present a new data exchange format, the Camera Trap Data Package (Camtrap DP), designed to allow users to easily exchange, harmonize and archive camera trap data at local to global scales. Camtrap DP structures camera trap data in a simple yet flexible data model consisting of three tables (Deployments, Media and Observations) that supports a wide range of camera deployment designs, classification techniques (e.g., human and AI, media‐based and event‐based) and analytical use cases, from compiling species occurrence data through distribution, occupancy and activity modeling to density estimation. The format further achieves interoperability by building upon existing standards, Frictionless Data Package in particular, which is supported by a suite of open software tools to read and validate data. Camtrap DP is the consensus of a long, in‐depth, consultation and outreach process with standard and software developers, the main existing camera trap data management platforms, major players in the field of camera trapping and the Global Biodiversity Information Facility (GBIF). Under the umbrella of the Biodiversity Information Standards (TDWG), Camtrap DP has been developed openly, collaboratively and with version control from the start. We encourage camera trapping users and developers to join the discussion and contribute to the further development and adoption of this standard.

    

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3. Geminivirus-encoded TrAP suppressor inhibits the histone methyltransferase SUVH4/KYP to counter host defense

   https://doi.org/10.7554/eLife.06671  

   Castillo-González, Claudia ; Liu, Xiuying ; Huang, Changjun ; Zhao, Changjiang ; Ma, Zeyang ; Hu, Tao ; Sun, Feng ; Zhou, Yijun ; Zhou, Xueping ; Wang, Xiu-Jie ; et al ( September 2015 , eLife)

   Transcriptional gene silencing (TGS) can serve as an innate immunity against invading DNA viruses throughout Eukaryotes. Geminivirus code for TrAP protein to suppress the TGS pathway. Here, we identified an Arabidopsis H3K9me2 histone methyltransferase, Su(var)3-9 homolog 4/Kryptonite (SUVH4/KYP), as a bona fide cellular target of TrAP. TrAP interacts with the catalytic domain of KYP and inhibits its activity in vitro. TrAP elicits developmental anomalies phenocopying several TGS mutants, reduces the repressive H3K9me2 mark and CHH DNA methylation, and reactivates numerous endogenous KYP-repressed loci in vivo. Moreover, KYP binds to the viral chromatin and controls its methylation to combat virus infection. Notably, kyp mutants support systemic infection of TrAP-deficient Geminivirus. We conclude that TrAP attenuates the TGS of the viral chromatin by inhibiting KYP activity to evade host surveillance. These findings provide new insight on the molecular arms race between host antiviral defense and virus counter defense at an epigenetic level.

    

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4. Proton radiation effects on electronic defect states in MOCVD-grown (010) β -Ga2O3

   https://doi.org/10.1063/5.0121416  

   McGlone, Joe F. ; Ghadi, Hemant ; Cornuelle, Evan ; Armstrong, Andrew ; Burns, George ; Feng, Zixuan ; Uddin Bhuiyan, A. F. M. Anhar ; Zhao, Hongping ; Arehart, Aaron R. ; Ringel, Steven A. ( January 2023 , Journal of Applied Physics)

   The impact of 1.8 MeV proton irradiation on metalorganic chemical vapor deposition grown (010) β-Ga2O3 Schottky diodes is presented. It is found that after a 10.8×1013cm−2 proton fluence the Schottky barrier height of (1.40±0.05 eV) and the ideality factor of (1.05±0.05) are unaffected. Capacitance–voltage extracted net ionized doping curves indicate a carrier removal rate of 268±10cm−1. The defect states responsible for the observed carrier removal are studied through a combination of deep level transient and optical spectroscopies (DLTS/DLOS) as well as lighted capacitance–voltage (LCV) measurements. The dominating effect on the defect spectrum is due to the EC-2.0 eV defect state observed in DLOS and LCV. This state accounts for ∼75% of the total trap introduction rate and is the primary source of carrier removal from proton irradiation. Of the DLTS detected states, the EC-0.72 eV state dominated but had a comparably smaller contribution to the trap introduction. These two traps have previously been correlated with acceptor-like gallium vacancy-related defects. Several other trap states at EC-0.36, EC-0.63, and EC-1.09 eV were newly detected after proton irradiation, and two pre-existing states at EC-1.2 and EC-4.4 eV showed a slight increase in concentration after irradiation, together accounting for the remainder of trap introduction. However, a pre-existing trap at EC-0.40 eV was found to be insensitive to proton irradiation and, therefore, is likely of extrinsic origin. The comprehensive defect characterization of 1.8 MeV proton irradiation damage can aid the modeling and design for a range of radiation tolerant devices.

    

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5. Investigation of defects in melt and solution grown perovskite CsPbBr3 single crystals

   https://doi.org/10.1063/5.0142802  

   Liu, Zhifu ; Peters, John A. ; Pan, Lei ; Klepov, Vladislav ; De Siena, Michael ; Benadia, Alessandro ; Chung, Duck Young ; Kanatzidis, Mercouri G. ; Wessels, Bruce W. ( March 2023 , Applied Physics Letters)

   Recently, there has been considerable interest in x-ray and gamma ray detectors with large volume and high energy resolution that operate at room temperature. To improve detector energy resolution, the carrier mobility-lifetime product needs to be increased, and the electronic trap state concentration needs to be minimized. Defect concentrations in the part per billion range can alter the charge transport and carrier recombination lifetime. In this work, thermally stimulated current spectroscopy measurements were systematically carried out in bulk halide perovskite single crystals of CsPbBr3 over a temperature range of 80–320 K. The origins and trap parameters of CsPbBr3 crystals from the solution growth and melt growth procedures were determined and compared. Trap concentrations were ranged from 1 × 1011 to 1 × 1016 cm−3. Appreciable detector performance was observed for CsPbBr3 crystals with trap concentrations less than 1 × 1014 cm−3. The comparison of spectral responses of crystal samples grown using two different methods shows that, after purification, solution-grown crystals are comparable to melt-grown crystals in terms of low defect concentration and improved detector performance. For an improved mobility-lifetime product and enhanced spectral response to high energy radiation from fissile materials, trap states in either type of a crystal ingot must be reduced closer to 1011 cm−3.

    

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