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1. Advancing undergraduate research through regional community college partnerships at Portland State University

   Rice, A. ; Loikith, P. ; Murry, A. ( December 2023 , Transactions American Geophysical Union)

   Opportunities for undergraduate research in STEM programs at community colleges can be few where lower-division science curriculum emphasizes classroom and laboratory-based learning and research laboratories are limited in number. This is particularly true in the geosciences where specialized programs are extremely rare. Urban serving academic research institutions have a unique role and opportunity to partner with regional community college programs for undergraduate research early-on in student post-secondary educational experiences. Programs built for community college transfer students to urban serving undergraduate programs can serve to integrate students into major programs and help reduce transfer shock. The benefits of exploring research as an undergraduate scholar are numerous and include: building towards mastery of technical skills; developing problem-solving in a real-world environment; reading and digesting scientific literature; analyzing experimental and simulation data; working independently and as part of a team; developing a mentoring relationship with a research advisor; and building a sense of belonging and confidence in a scientific field. However, many undergraduate research internships are targeted towards junior-level STEM majors already engaged in upper-division coursework and considering graduate school which effectively excludes community college students from participating. The Center for Climate and Aerosol Research (CCAR) Research Experience for Undergraduate program at Portland State University serves to help build the future diverse research community. 10-week intern research experiences are paired with an expert faculty mentor are designed for students majoring in the natural/physical sciences but not necessarily with a background in climate or atmospheric science. Additional programmatic activities include: 1-week orientation and training using short courses, faculty research seminars, and hands-on group workshops; academic professional and career development workshops throughout summer; journal club activities; final presentations at end of summer CCAR symposium; opportunities for travel for student presentations at scientific conferences; and social activities. Open to all qualifying undergraduates, since 2014 the program recruits primarily from regional (Northwest) community colleges, rural schools, and Native American serving institutions; recruiting students who would be unlikely to be otherwise exposed to such opportunities at their home institution. Over the past 9 cohorts of REU interns (2014-2019), approximately one third of CCAR REU scholars are community colleges students. Here we present criteria employed for selection of REU scholars and an analysis of selection biases in a comparison of students from community colleges, 4-year colleges, and PhD granting universities. We further investigate differential outcomes in efficacy of the REU program using evaluation data to assess changes over the program including: knowledge, intrinsic motivation, extrinsic motivation, science identity, program satisfaction, and career aspirations. In this presentation, we present these findings along with supportive qualitative analyses and discuss their implications for community college students in undergraduate research programs in geosciences. 

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2. Board 33: The SEECRS Scholar Academy at Whatcom Community College: An S-STEM Scholarship Program

   Vannelli, T ; Davishahl, E ; Babcock, M ; Hanley, D ; Harri, E. ( June 2018 , ASEE Peer)

   The STEM Excellence through Engagement in Collaboration, Research, and Scholarship (SEECRS) project at Whatcom Community College is a five-year program aiming to support academically talented students with demonstrated financial need in biology, chemistry, geology, computer science, engineering, and physics. This project is funded by an NSF S-STEM (Scholarships in Science, Technology, Engineering, and Mathematics) grant awarded in January 2017. Through an inclusive and long-range effort, the college identified a strong need for financial and comprehensive supports for STEM students. This project will offer financial, academic, and professional support to three two-year cohorts of students. The SEECRS project aims to utilize a STEM-specific guided pathways approach to strengthen recruitment, retention, and matriculation of STEM students at the community college level. Scholarship recipients will be supported through participation in the SEECRS Scholars Academy, a multi-pronged approach to student support combining elements of community building, faculty mentorship, targeted advising activities, authentic science practice, and social activities. Students are introduced to disciplines of interest through opportunities to engage in course-based undergraduate research experiences (CUREs) in Biology, Chemistry and Engineering courses, funded summer research opportunities, and seminars presented by STEM professionals. Communities of practice will be nurtured through the introduction of cohort building and faculty mentorship. Cohort development starts with a required two-credit course for all scholars that emphasizes STEM identity development, specifically focusing on identifying and coping with the ways non-dominant individuals (racial/ethnic minorities, non-male gender, lower socioeconomic status, first-generation, 2-year community college vs. 4-year institutions) are made to feel as outsiders in STEM. Each SEECRS scholar is paired with a faculty mentor who engages in ongoing mentor training. The project evaluation will determine the efficacy of the project activities in achieving their intended outcomes. Specifically, we will collect data to answer the research question: To what extent can a guided pathways approach provide a coordinated and supported STEM experience at Whatcom Community College that: (1) increases student success, and (2) positively shifts students’ STEM self-identity? The evaluation will employ a quasi-experimental research design, specifically a pretest-posttest design with a matched comparison group. Our first cohort of 14 students was selected over two application rounds (winter and summer 2017). We awarded ten full scholarships and four half-scholarships based on financial need data. Cohort demographics of note compared to institutional percentages are: females (64% vs. 57%), Hispanic (14% vs. 17%), African American (7% vs. 2%), white (79% vs. 66%), first generation college bound (43% vs. 37%). The cohort is comprised of six students interested in engineering, six in biology, and one each in geology and environmental sciences. With increased communication between the project team, our Financial Aid office, Entry and Advising, high school outreach, and the Title III grant-funded Achieve, Inspire, Motivate (AIM) Program, as well as a longer advertising time, we anticipate significantly enhancing our applicant pool for the next cohort. The results and lessons learned from our first year of implementation will be presented. 

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3. Board 33: The SEECRS Scholar Academy at Whatcom Community College: An S-STEM Scholarship Program

   Vannelli, T. A. ; Davishahl, E. ; Babcock, J. M. ; Hanley, D. ; Harri, E. ( June 2018 , ASEE annual conference & exposition proceedings)

   The STEM Excellence through Engagement in Collaboration, Research, and Scholarship (SEECRS) project at Whatcom Community College is a five-year program aiming to support academically talented students with demonstrated financial need in biology, chemistry, geology, computer science, engineering, and physics. This project is funded by an NSF S-STEM (Scholarships in Science, Technology, Engineering, and Mathematics) grant awarded in January 2017. Through an inclusive and long-range effort, the college identified a strong need for financial and comprehensive supports for STEM students. This project will offer financial, academic, and professional support to three two-year cohorts of students. The SEECRS project aims to utilize a STEM-specific guided pathways approach to strengthen recruitment, retention, and matriculation of STEM students at the community college level. Scholarship recipients will be supported through participation in the SEECRS Scholars Academy, a multi-pronged approach to student support combining elements of community building, faculty mentorship, targeted advising activities, authentic science practice, and social activities. Students are introduced to disciplines of interest through opportunities to engage in course-based undergraduate research experiences (CUREs) in Biology, Chemistry and Engineering courses, funded summer research opportunities, and seminars presented by STEM professionals. Communities of practice will be nurtured through the introduction of cohort building and faculty mentorship. Cohort development starts with a required two-credit course for all scholars that emphasizes STEM identity development, specifically focusing on identifying and coping with the ways non-dominant individuals (racial/ethnic minorities, non-male gender, lower socioeconomic status, first-generation, 2-year community college vs. 4-year institutions) are made to feel as outsiders in STEM. Each SEECRS scholar is paired with a faculty mentor who engages in ongoing mentor training. The project evaluation will determine the efficacy of the project activities in achieving their intended outcomes. Specifically, we will collect data to answer the research question: To what extent can a guided pathways approach provide a coordinated and supported STEM experience at Whatcom Community College that: (1) increases student success, and (2) positively shifts students’ STEM self-identity? The evaluation will employ a quasi-experimental research design, specifically a pretest-posttest design with a matched comparison group. Our first cohort of 14 students was selected over two application rounds (winter and summer 2017). We awarded ten full scholarships and four half-scholarships based on financial need data. Cohort demographics of note compared to institutional percentages are: females (64% vs. 57%), Hispanic (14% vs. 17%), African American (7% vs. 2%), white (79% vs. 66%), first generation college bound (43% vs. 37%). The cohort is comprised of six students interested in engineering, six in biology, and one each in geology and environmental sciences. With increased communication between the project team, our Financial Aid office, Entry and Advising, high school outreach, and the Title III grant-funded Achieve, Inspire, Motivate (AIM) Program, as well as a longer advertising time, we anticipate significantly enhancing our applicant pool for the next cohort. The results and lessons learned from our first year of implementation will be presented. 

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4. A modular laboratory course using planarians to study genes involved in tissue regeneration

   https://doi.org/10.1002/bmb.21259  

   Ochoa, Stacy D. ; Dores, Michael R. ; Allen, John M. ; Tran, Tuan ; Osman, Maryan ; Vázquez Castellanos, Nidia P. ; Trejo, JoAnn ; Zayas, Ricardo M. ( June 2019 , Biochemistry and Molecular Biology Education)

   Undergraduate research experiences are excellent opportunities to engage students in science alongside experienced scientists, but at large institutions, it is challenging to accommodate all students. To address and engage a larger number of students, we developed a modular laboratory course based on the course‐based undergraduate research experiences model. This new course was integrated with the scientific aims of a research laboratory studying the cellular and molecular mechanisms underlying tissue regeneration in planarians. In this course, students were asked to identify genes with roles in planarian biology. Students analyzed and cloned an assigned gene, determined its expression patternin situand examined its function in regeneration. Additionally, we developed critical thinking and scientific communication skills by incorporating activities focused on critical concepts. Students obtained high quality primary data and were successful in completing and mastering the course learning outcomes. They benefitted by developing basic research skills, learning to perform, trouble‐shooting experiments, reading and critically analyzing primary literature, and using the information to defend and explain their experimental results. Through this course, students also increased their confidence and ability to perform independent scientific research. The course was designed to make it accessible to the community to implement and adapt as appropriate in diverse institutions. © 2019 International Union of Biochemistry and Molecular Biology, 47(5):547–559, 2019.

    

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5. Teaching virtual protein‐centric CUREs and UREs using computational tools

   Bell, Anthony. ( September 2020 , Biochemistry and molecular biology education)

   Responding to the need to teach remotely due to COVID-19, we used readily available computational approaches (and developed associated tutorials (https://mdh-cures-community.squarespace.com/virtual-cures-and-ures)) to teach virtual Course-Based Undergraduate Research Experience (CURE) laboratories that fulfil generally accepted main components of CUREs or Undergraduate Research Experiences (UREs): Scientific Background, Hypothesis Development, Proposal, Experiments, Teamwork, Data Analysis, Conclusions, and Presentation1. We then developed and taught remotely, in three phases, protein-centric CURE activities that are adaptable to virtually any protein, emphasizing contributions of noncovalent interactions to structure, binding and catalysis (an ASBMB learning framework2 foundational concept). The courses had five learning goals (unchanged in the virtual format),focused on i) use of primary literature and bioinformatics, ii) the roles of non-covalent interactions, iii) keeping accurate laboratory notebooks, iv) hypothesis development and research proposal writing, and, v) presenting the project and drawing evidence based conclusions The first phase, Developing a Research Proposal, contains three modules, and develops hallmarks of a good student-developed hypothesis using available literature (PubMed3) and preliminary observations obtained using bioinformatics, Module 1: Using Primary Literature and Data Bases (Protein Data Base4, Blast5 and Clustal Omega6), Module 2: Molecular Visualization (PyMol7 and Chimera8), culminating in a research proposal (Module 3). Provided rubrics guide student expectations. In the second phase, Preparing the Proteins, students prepared necessary proteins and mutants using Module 4: Creating and Validating Models, which leads users through creating mutants with PyMol, homology modeling with Phyre29 or Missense10, energy minimization using RefineD11 or ModRefiner12, and structure validation using MolProbity13. In the third phase, Computational Experimental Approaches to Explore the Questions developed from the Hypothesis, students selected appropriate tools to perform their experiments, chosen from computational techniques suitable for a CURE laboratory class taught remotely. Questions, paired with computational approaches were selected from Modules 5: Exploring Titratable Groups in a Protein using H++14, 6: Exploring Small Molecule Ligand Binding (with SwissDock15), 7: Exploring Protein-Protein Interaction (with HawkDock16), 8: Detecting and Exploring Potential Binding Sites on a Protein (with POCASA17 and SwissDock), and 9: Structure-Activity Relationships of Ligand Binding & Drug Design (with SwissDock, Open Eye18 or the Molecular Operating Environment (MOE)19). All involve freely available computational approaches on publicly accessible web-based servers around the world (with the exception of MOE). Original literature/Journal club activities on approaches helped students suggest tie-ins to wet lab experiments they could conduct in the future to complement their computational approaches. This approach allowed us to continue using high impact CURE teaching, without changing our course learning goals. Quantitative data (including replicates) was collected and analyzed during regular class periods. Students developed evidence-based conclusions and related them to their research questions and hypotheses. Projects culminated in a presentation where faculty feedback was facilitated with the Virtual Presentation platform from QUBES20 These computational approaches are readily adaptable for topics accessible for first to senior year classes and individual research projects (UREs). We used them in both partial and full semester CUREs in various institutional settings. We believe this format can benefit faculty and students from a wide variety of teaching institutions under conditions where remote teaching is necessary. 

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