skip to main content


Title: glupyter: Enabling multi-dimensional linked data visualization with glue in the browser.. https://doi.org/10.5281/zenodo.6875831
Poster representing NSF award 1908419 for the NSF CSSI PI meeting to be held July 25/26, 2022  more » « less
Award ID(s):
1908419
NSF-PAR ID:
10355108
Author(s) / Creator(s):
;
Date Published:
Journal Name:
on zenodo (NSF CSSI PI meeting)
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ABSTRACT In eukaryotic cells, the s oluble N -ethylmaleimide- s ensitive f actor (NSF) a ttachment protein re ceptor (SNARE) proteins comprise the minimal machinery that triggers fusion of transport vesicles with their target membranes. Comparative studies revealed that genes encoding the components of the SNARE system are highly conserved in yeast, insect, and human genomes. Upon infection of insect cells by the virus Autographa californica multiple nucleopolyhedrovirus (AcMNPV), the transcript levels of most SNARE genes initially were upregulated. We found that overexpression of dominant-negative (DN) forms of NSF or knockdown of the expression of NSF, the key regulator of the SNARE system, significantly affected infectious AcMNPV production. In cells expressing DN NSF, entering virions were trapped in the cytoplasm or transported to the nucleus with low efficiency. The presence of DN NSF also moderately reduced trafficking of the viral envelope glycoprotein GP64 to the plasma membrane but dramatically inhibited production of infectious budded virions (BV). Transmission electron microscopy analysis of infections in cells expressing DN NSF revealed that progeny nucleocapsids were retained in a perinuclear space surrounded by inner and outer nuclear membranes. Several baculovirus conserved (core) proteins (Ac76, Ac78, GP41, Ac93, and Ac103) that are important for infectious budded virion production were found to associate with NSF, and NSF was detected within the assembled BV. Together, these data indicate that the cellular SNARE system is involved in AcMNPV infection and that NSF is required for efficient entry and nuclear egress of budded virions of AcMNPV. IMPORTANCE Little is known regarding the complex interplay between cellular factors and baculoviruses during viral entry and egress. Here, we examined the cellular SNARE system, which mediates the fusion of vesicles in healthy cells, and its relation to baculovirus infection. Using a DN approach and RNA interference knockdown, we demonstrated that a general disruption of the SNARE machinery significantly inhibited the production of infectious BV of AcMNPV. The presence of a DN NSF protein resulted in low-efficiency entry of BV and the retention of progeny nucleocapsids in the perinuclear space during egress. Combined with these effects, we also found that several conserved (core) baculovirus proteins closely associate with NSF, and these results suggest their involvement in the egress of BV. Our findings are the first to demonstrate that the SNARE system is required for efficient entry of BV and nuclear egress of progeny nucleocapsids of baculoviruses. 
    more » « less
  2. Applying for grants from the National Science Foundation (NSF) requires a paradigm shift at many community and technical colleges, because the primary emphasis at two-year colleges is on teaching. This shift is necessary because of the NSF expectation that a STEM faculty member will lead the project as Principal Investigator. Preparing successful NSF grant proposals also requires knowledge, skills, and strategies that differ from other sources from which two-year colleges seek grant funding. Since 2012, the Mentor-Connect project has been working to build capacity among two-year colleges and leadership skills among their STEM faculty to help them prepare competitive grant proposals for the National Science Foundation’s Advanced Technological Education (NSF-ATE) program. NSF-ATE focuses on improving the education of technicians for advanced technology fields that drive the nation’s economy. As an NSF-ATE-funded initiative, Mentor-Connect has developed a three-pronged approach of mentoring, technical assistance, and digital resources to help potential grantees with the complexities of the proposal submission process. Grant funding makes it possible to provide this help at no cost to eligible, two-year college educators. Mentor-Connect support services for prospective grantees are available for those who are new to ATE (community or technical colleges that have not received an NSF ATE award in 7 or more years), those seeking a larger second grant from the ATE Program after completing a small, new-to-ATE project, and for those whose first or second grant proposal submission to the NSF ATE Program was declined (not funded). The Mentor-Connect project has succeeded in raising interest in the NSF-ATE program. Over a seven-year period more than 80% of the 143 participating colleges have submitted proposals. Overall, the funding rate among colleges that participated in the Mentor-Connect project is exceptionally high. Of the 97 New-to-ATE proposals submitted from Cohorts 1 through 6, 71 have been funded, for a funding rate of 73%. Mentor-Connect is also contributing to a more geographically and demographically diverse NSF-ATE program. To analyze longer-term impacts, the project’s evaluator is conducting campus site visits at the new-to-ATE grantee institutions as their initial ATE projects are being completed. A third-party researcher has contributed to the site-visit protocol being used by evaluators. The researcher is also analyzing the site-visit reports to harvest outcomes from this work. This paper shares findings from seven cohorts that have completed a grant cycle with funding results known, as well as qualitative data from site visits with the first two cohorts of grantees. Recommendations for further research are also included. 
    more » « less
  3. Applying for grants from the National Science Foundation (NSF) requires a paradigm shift at many community and technical colleges, because the primary emphasis at two-year colleges is on teaching. This shift is necessary because of the NSF expectation that a STEM faculty member will lead the project as Principal Investigator. Preparing successful NSF grant proposals also requires knowledge, skills, and strategies that differ from other sources from which two-year colleges seek grant funding. Since 2012, the Mentor-Connect project has been working to build capacity among two-year colleges and leadership skills among their STEM faculty to help them prepare competitive grant proposals for the National Science Foundation’s Advanced Technological Education (NSF-ATE) program. NSF-ATE focuses on improving the education of technicians for advanced technology fields that drive the nation’s economy. As an NSF-ATE-funded initiative, Mentor-Connect has developed a three-pronged approach of mentoring, technical assistance, and digital resources to help potential grantees with the complexities of the proposal submission process. Grant funding makes it possible to provide this help at no cost to eligible, two-year college educators. Mentor-Connect support services for prospective grantees are available for those who are new to ATE (community or technical colleges that have not received an NSF ATE award in 7 or more years), those seeking a larger second grant from the ATE Program after completing a small, new-to-ATE project, and for those whose first or second grant proposal submission to the NSF ATE Program was declined (not funded). The Mentor-Connect project has succeeded in raising interest in the NSF-ATE program. Over a seven-year period more than 80% of the 143 participating colleges have submitted proposals. Overall, the funding rate among colleges that participated in the Mentor-Connect project is exceptionally high. Of the 97 New-to-ATE proposals submitted from Cohorts 1 through 6, 71 have been funded, for a funding rate of 73%. Mentor-Connect is also contributing to a more geographically and demographically diverse NSF-ATE program. To analyze longer-term impacts, the project’s evaluator is conducting campus site visits at the new-to-ATE grantee institutions as their initial ATE projects are being completed. A third-party researcher has contributed to the site-visit protocol being used by evaluators. The researcher is also analyzing the site-visit reports to harvest outcomes from this work. This paper shares findings from seven cohorts that have completed a grant cycle with funding results known, as well as qualitative data from site visits with the first two cohorts of grantees. Recommendations for further research are also included. 
    more » « less
  4. Information about grants funded by NSF to support SES research from 2000-2015. The grants included in this dataset are a subset that we identified as having an SES research focus from a set of grants accessed using the Dimensions platform (https://dimensions.ai). CSV file with 35 columns and names in header row: "Grant Searched" lists the granting NSF program (text); "Grant Searched 2" lists a secondary granting NSF program, if applicable (text); "Grant ID" is the ID from the Dimensions platform (string); "Grant Number" is the NSF Award number (integer); "Number of Papers (NSF)" is the count of publications listed under "PUBLICATIONS PRODUCED AS A RESULT OF THIS RESEARCH" in the NSF Award Search page for the grant (integer); "Number of Pubs Tracked" is the count of publications from "Number of Papers (NSF)" included in our analysis (integer); "Publication notes" are our notes about the publication information. We used "subset" to denote when a grant was associated with >10 publications and we used a random sample of 10 publications in our analysis (text); "Unique ID" is our unique identifier for each grant in the dataset (integer); "Collaborative/Cross Program" denotes whether the grant was submitted as part of a set of collaborative or cross-program proposals. In this case, all linked proposals are given the same unique identifier and treated together in the analysis. (text); "Title" is the title of the grant (text); "Title translated" is the title of the grant translated to English, where applicable (text); "Abstract" is the abstract of the grant (text); "Abstract translated" is the abstract of the grant translated to English, where applicable (text); "Funding Amount" is the numeric value of funding awarded to the grant (integer); "Currency" is the currency associated with the field "Funding Amount" (text); "Funding Amount in USD" is the numeric value of funding awarded to the grant expressed in US Dollars (integer); "Start Date" is the start date of the grant (mm/dd/yyyy); "Start Year" is the year in which grant funding began (year); "End Date" is the end date of the grant (mm/dd/yyyy); "End Year" is the year in which the term of the grant expired (year); "Researchers" lists the Principal Investigators on the grant in First Name Last Name format, separated by semi-colons (text); "Research Organization - original" gives the affiliation of the lead PI as listed in the grant (text); "Research Organization - standardized" gives the affiliation of each PI in the list, separated by semi-colons (text); "GRID ID" is a list of the unique identifier for each the Research Organization in the Global Research Identifier Database [https://grid.ac/?_ga=2.26738100.847204331.1643218575-1999717347.1643218575], separated by semi-colons (string); "Country of Research organization" is a list of the countries in which each Research Organization is located, separated by semi-colons (text); "Funder" gives the NSF Directorate that funded the grant (text); "Source Linkout" is a link to the NSF Award Search page with information about the grant (URL); "Dimensions URL" is a link to information about the grant in Dimensions (URL); "FOR (ANZSRC) Categories" is a list of Field of Research categories [from the Australian and New Zealand Standard Research Classification (ANZSRC) system] associated with each grant, separated by semi-colons (string); "FOR [1-5]" give the FOR categories separated. "NOTES" provide any other notes added by the authors of this dataset during our processing of these data. 
    more » « less
  5. The National Science Foundation Advanced Technological Education (NSF-ATE) program has grant funding opportunities available to support CTE and STEM technician program development. NSF-ATE grant funding opportunities are intended to help educators develop or improve their 2-year technician programs. Proposals may focus on program, curriculum, and educational materials development, program improvement, faculty professional development, teacher preparation, career pathways, outreach activities, undergraduate research experiences, internships, apprenticeships, and more. Partnerships with universities, colleges, and 7-12 institutions in support of workforce development are encouraged. Industry partnerships are essential for NSF-ATE projects. NSF-ATE supports Emerging Technologies and technologies such as Biotechnology, Engineering, Energy, Environmental, Agricultural, Advanced Manufacturing, Micro/Nano Technologies, Information, Security, and Geospatial. Multiple categories of NSF-ATE grant funding are available including Projects, Small Projects for Institutions New to ATE, Applied Research on Technician Education, National Centers, and Resource Centers. The new NSF-ATE solicitation (NSF 21-598) was released in 2021 and includes higher funding levels and multiple categories of grant funding opportunities, including a new Consortia for Innovations in Technician Education. NSF-ATE has some helpful resources for educators planning to develop or improve their courses or programs. Mentoring opportunities for grant proposal development are available through multiple projects such as Mentor-Connect, MNT-EC (Micro Nano Technology Education Center), Mentor Up, Project Vision, Pathways to Innovation, CCPISTEM, and FORCCE-ATE. Each of these projects has a unique approach and a different focus to help their mentees successfully submit NSF-ATE grant proposals. 
    more » « less