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Abstract BackgroundEnvironmental DNA (eDNA) is an effective tool for the detection and monitoring of presence or absence of rare and invasive species. These techniques have been extended to quantify biomass in vertebrates, particularly in fish species. However, the efficacy of eDNA techniques to quantify biomass in invertebrate species has rarely been examined. This study tested whether eDNA could be used to determine the biomass of the world-wide invasive green crab,Carcinus maenas. In a controlled laboratory study, the relationship between biomass andC. maenaseDNA concentration was examined in the context of different biotic (activity) and abiotic (temperature) parameters. ResultsWhen incubating different numbers of crabs in sterile saltwater for up to 7 days, a relationship between eDNA concentration and biomass was observed at temperatures of 6.7 ℃ and 18.7 ℃, but not at 12.8 ℃. Additionally, motor activity, aggression level, time of sampling, and features of organismal decay had significant impact on the concentration ofC. maenaseDNA collected. ConclusionsWe show that eDNA concentration did not correlate with biomass, and that biomass, temperature, organismal characteristics, and potentially many more parameters affect shedding and degradation rates for eDNA in this species, thus, impacting the recoverable eDNA concentration. Therefore, eDNA techniques are not likely to provide a reliable signal of biomass in the invasive invertebrate speciesC. maenas.
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Challenges in eDNA detection of the invasive European green crab, Carcinus maenas
Abstract The early detection of invasive species is essential to cease the spread of the species before it can cause irreversible damage to the environment. The analysis of environmental DNA (eDNA) has emerged as a non-harmful method to detect the presence of a species before visual detection and is a promising approach to monitor invasive species. Few studies have investigated the use of eDNA for arthropods, as their exoskeleton is expected to limit the release of eDNA into the environment. We tested published primers for the invasive European green crab,Carcinus maenas, in the Gulf of Maine and found them not species-specific enough for reliable use outside of the area for which they were designed for. We then designed new primers, tested them against a broad range of local faunal species, and validated these primers in a field study. We demonstrate that eDNA analyses can be used for crustaceans with an exoskeleton and suggest that primers and probe sequences must be tested on local fauna at each location of use to ensure no positive amplification of these other species.
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- Award ID(s):
- 1849227
- PAR ID:
- 10366818
- Publisher / Repository:
- Springer Science + Business Media
- Date Published:
- Journal Name:
- Biological Invasions
- Volume:
- 24
- Issue:
- 6
- ISSN:
- 1387-3547
- Page Range / eLocation ID:
- p. 1881-1894
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
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