skip to main content


Title: Leveraging genomics to understand threats to migratory birds
Abstract

Understanding how risk factors affect populations across their annual cycle is a major challenge for conserving migratory birds. For example, disease outbreaks may happen on the breeding grounds, the wintering grounds, or during migration and are expected to accelerate under climate change. The ability to identify the geographic origins of impacted individuals, especially outside of breeding areas, might make it possible to predict demographic trends and inform conservation decision‐making. However, such an effort is made more challenging by the degraded state of carcasses and resulting low quality of DNA available. Here, we describe a rapid and low‐cost approach for identifying the origins of birds sampled across their annual cycle that is robust even when DNA quality is poor. We illustrate the approach in the common loon (Gavia immer), an iconic migratory aquatic bird that is under increasing threat on both its breeding and wintering areas. Using 300 samples collected from across the breeding range, we develop a panel of 158 single‐nucleotide polymorphisms (SNP) loci with divergent allele frequencies across six genetic subpopulations. We use this SNP panel to identify the breeding grounds for 142 live nonbreeding individuals and carcasses. For example, genetic assignment of loons sampled during botulism outbreaks in parts of the Great Lakes provides evidence for the significant role the lakes play as migratory stopover areas for loons that breed across wide swaths of Canada, and highlights the vulnerability of a large segment of the breeding population to botulism outbreaks that are occurring in the Great Lakes with increasing frequency. Our results illustrate that the use of SNP panels to identify breeding origins of carcasses collected during the nonbreeding season can improve our understanding of the population‐specific impacts of mortality from disease and anthropogenic stressors, ultimately allowing more effective management.

 
more » « less
Award ID(s):
1837940 1942313
NSF-PAR ID:
10450684
Author(s) / Creator(s):
 ;  ;  ;  ;  ;  ;  ;  ;  ;  
Publisher / Repository:
Wiley-Blackwell
Date Published:
Journal Name:
Evolutionary Applications
Volume:
14
Issue:
6
ISSN:
1752-4571
Page Range / eLocation ID:
p. 1646-1658
Format(s):
Medium: X
Sponsoring Org:
National Science Foundation
More Like this
  1. ABSTRACT Host-parasite relationships between Western Burrowing Owls (Athene cunicularia hypugaea) and the fleas (Pulex irritans, Siphonaptera:Pulicidae) they harbor were studied to understand the extent to which migratory Burrowing Owls translocated fleas from wintering grounds to breeding grounds. This has implications for host-parasite relationships in Burrowing Owls and also potentially for the dynamics of plague, as Burrowing Owl distributions overlap plague foci, owls inhabit fossorial mammal colonies where epizootic outbreaks of plague occur, and owls may harbor species of flea that are competent plague vectors. We used hydrogen stable isotope analysis to help elucidate geographic origins of fleas collected from adults and nestlings in 2 migratory populations of Burrowing Owls in Idaho and Oregon, USA. For adults, we posited that bird-mediated dispersal would impart flea isotopic compositions representative of southern latitudes and be similar to owl toenail tissue recently grown on wintering grounds, but they would differ from contour feathers presumably grown on breeding grounds the previous year. We assumed nestling feathers and toenails would have isotopic compositions representative of the breeding grounds. We analyzed contour feathers and toenails from adults collected shortly after they arrived in breeding grounds following spring migration and from nestlings later in the breeding season, to which we compared isotopic compositions in fleas collected from individuals of both age classes. Fleas on nestlings in both populations had isotopic compositions that did not differ from nestling feathers and toenails, suggesting that nestling fleas had breeding ground origins. Fleas on adults in one population (Oregon) had breeding ground isotopic signatures, as flea compositions did not differ from nestling feathers or toenails. Adult owls in Idaho had fleas that similarly did not express a wintering ground signature, but they were enriched in the heavy isotope (deuterium) relative to nestling feathers and toenails. Therefore, we discuss the possibility that adult owls in Idaho acquired fleas at migratory stopover sites. While the latter indicates that Burrowing Owls have the potential to disperse fleas, there was no evidence of continent-wide movement of fleas by owls from wintering grounds to breeding grounds. 
    more » « less
  2. ABSTRACT

    Populations of Vaux’s Swift (Chaetura vauxi), like those of many aerial insectivores, are rapidly declining. Determining when and where populations are limited across the annual cycle is important for their conservation. Establishing the linkages between wintering and breeding sites and the strength of the connections between them is a necessary first step. In this study, we analyzed 3 stable isotopes (δ13C, δ15N, δ2H) from feathers collected during spring migration from Vaux’s Swifts that perished during a stopover on Vancouver Island, British Columbia, Canada. We previously analyzed claw tissue (grown during winter) from the same individuals, revealing that the swifts likely wintered in 2 or 3 locations/habitats. Here, we used stable isotope analysis of flight feathers presumed to have been grown on, or near, the breeding grounds to determine the likely previous breeding locations and presumed destinations for the swifts. Stable isotope values (δ13C, δ15N, δ2H) showed no meaningful variation between age classes, sexes, or with body size. Surprisingly, ~26% of the birds sampled had feather isotope values that were not consistent with growth on their breeding grounds. For the remaining birds, assigned breeding origins appeared most consistent with molt origins on Vancouver Island. Overall, migratory connectivity of this population was relatively weak (rM = 0.07). However, the degree of connectivity depended on how many winter clusters were analyzed; the 2-cluster solution suggested no significant connectivity, but the 3-cluster solution suggested weak connectivity. It is still unclear whether low migratory connectivity observed for Vaux’s Swift and other aerial insectivores may make their populations more or less vulnerable to habitat loss; therefore, further efforts should be directed to assessing whether aerial insectivores may be habitat limited throughout the annual cycle.

     
    more » « less
  3. Abstract

    Migratory birds that experience poor overwintering conditions are often late to arrive at the breeding grounds, which is known to depress individual fitness. Despite the importance of this carryover effect, few studies have investigated how individuals can modify migratory behaviors en route to reduce delays on arrival and whether accelerating migration incurs survival costs. To examine this, we used Motus Wildlife Tracking System to track individual American redstarts (Setophaga ruticilla) as they migrated from wintering grounds in Southwest Jamaica through Florida en route to their breeding areas. We leveraged long‐term data on spring departure timing and breeding latitude to quantify the relative departure dates (early vs. delayed) of tagged individuals, which we then related to individual migration rates and apparent annual survival. Compared to those initiating migration earlier, individuals that departed relatively late (10‐day delay) migrated at a 43% faster rate, which decreased their annual survival by 6.3%. Our results are consistent with the hypothesis that spring migrants use speed to compensate for departure delays despite incurring survival costs. This compensatory behavior may potentially underly differential survival during spring migration and may be particularly widespread across short‐lived migratory birds generally considered time‐constrained.

     
    more » « less
  4. Abstract Aim

    The role of migratory birds in the spread of parasites is poorly known, in part because migratory strategies and behaviours potentially affecting transmission are not easy to study. We investigated the dynamics of infection by blood parasites through the annual cycle of a long‐distance Nearctic–Neotropical migratory songbird to examine the role of this species in dispersing parasites between continents.

    Location

    The Americas.

    Taxon

    Grey‐cheeked Thrush (Catharus minimus, Aves, Passeriformes, Turdidae), Birds.

    Methods

    We used molecular and microscopy screening of haemosporidian parasites (Plasmodium,Haemoproteus, andLeucocytozoon) to examine the prevalence, distribution, and diversity of lineages through the annual cycle (breeding, migration, and wintering) of the grey‐cheeked thrush in North and Central America, Santa Marta mountains, the Andes, and the Amazon. We aimed to identify transmission areas, to examine the degree of sharing of haemosporidian lineages with resident birds in various areas and to assess the potential role of immunologically naïve juvenile individuals in parasite transmission.

    Results

    Prevalence and lineage diversity of haemosporidians varied significantly over time, being higher during breeding and fall and spring migration, and declining during wintering. Grey‐cheeked thrush shared few parasite lineages with tropical resident birds and slightly more lineages with other migratory and resident boreal species. We detected gametocytes in blood during spring migration stopover, but these were of lineages not found in resident tropical birds, indicating relapses of parasites transmitted elsewhere. Transmission likely occurs mostly on the breeding grounds, where juveniles and adults carried lineages restricted to closely related species of thrushes and other species of boreal birds.

    Main conclusions

    Long‐distance migratory songbirds are likely not important dispersers of blood parasites because there are ecological and evolutionary barriers to the interchange of parasites across vastly separated areas. Further work with thorough spatial and temporal sampling across other species, and considering the role of vectors, is necessary to understand the ecological and evolutionary factors explaining the distribution of parasites over broad scales.

     
    more » « less
  5. Abstract

    Seasonal migrations are fascinating and ecologically important, but many migratory species are declining as climate change and land‐use change alter the habitats used by migrants across the annual cycle. While some migratory birds use a single wintering site, others undertake large‐scale post‐migratory movements during the nonbreeding season. Technological advances that enable tracking individual birds are uncovering more examples of post‐migratory nonbreeding movements. Documenting these movements is important for conservation, which requires understanding when and where migrants use habitats throughout their range. Here, we reviewed existing literature and collected information on the post‐migratory nonbreeding movements of 92 migratory bird species from 18 orders across six continents. Among these records, the most commonly reported drivers of movements were resource availability and climate. This strong dependence of post‐migratory nonbreeding movements on birds' abiotic and biotic environments suggests that environmental change will impact the patterns of these movements and potentially the fitness of species that undertake them. We also reviewed post‐migratory nonbreeding movements in North American‐breeding thrushes from the genusCatharusto examine the drivers of these movements in five closely related migratory species. We find that species that are less territorial are more likely to use multiple sites during the nonbreeding season; however, there is little evidence for dietary, evolutionary, or environmental differences between thrush species that move during winter and those that are stationary. While we believe our study represents the most comprehensive list of species exhibiting post‐migratory nonbreeding movements to date, biases in sampling, a lack of common terminology for these movements, and the still‐nascent availability of inexpensive, lightweight tracking devices mean that there are probably more populations that undertake such movements. Future research into the consequences of post‐migratory nonbreeding movements for individual fitness and ecosystem services would advance our understanding of their conservation importance and their evolution.

     
    more » « less