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1. Mechanisms and heterogeneity of in situ mineral processing by the marine nitrogen fixer Trichodesmium revealed by single-colony metaproteomics

   https://doi.org/10.1038/s43705-021-00034-y  

   Held, Noelle A.; Sutherland, Kevin M.; Webb, Eric A.; McIlvin, Matthew R.; Cohen, Natalie R.; Devaux, Alexander J.; Hutchins, David A.; Waterbury, John B.; Hansel, Colleen M.; Saito, Mak A. (July 2021, ISME Communications)

   Abstract The keystone marine nitrogen fixer Trichodesmium thrives in high-dust environments. While laboratory investigations have observed that Trichodesmium colonies can access the essential nutrient iron from dust particles, less clear are the biochemical strategies underlying particle–colony interactions in nature. Here we demonstrate that Trichodesmium colonies engage with mineral particles in the wild with distinct molecular responses. We encountered particle-laden Trichodesmium colonies at a sampling location in the Southern Caribbean Sea; microscopy and synchrotron-based imaging then demonstrated heterogeneous associations with iron oxide and iron-silicate minerals. Metaproteomic analysis of individual colonies by a new low-biomass approach revealed responses in biogeochemically relevant proteins including photosynthesis proteins and metalloproteins containing iron, nickel, copper, and zinc. The iron-storage protein ferritin was particularly enriched implying accumulation of mineral-derived iron, and multiple iron acquisition pathways including Fe(II), Fe(III), and Fe-siderophore transporters were engaged. While the particles provided key trace metals such as iron and nickel, there was also evidence that Trichodesmium was altering its strategy to confront increased superoxide production and metal exposure. Chemotaxis regulators also responded to mineral presence suggesting involvement in particle entrainment. These molecular responses are fundamental to Trichodesmium’s ecological success and global biogeochemical impact, and may contribute to the leaching of particulate trace metals with implications for global iron and carbon cycling. 

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2. Applications of radiogenic and transition metal isotopes to the study of metallic mineral deposits

   https://doi.org/10.1016/b978-0-323-99762-1.00010-3  

   Chiaradia, Massimo; Mathur, Ryan; Vennemann, Torsten; Simon, Adam (January 2025, Elsevier)

   This chapter discusses how radiogenic and stable isotopes can be used in the study of metallic mineral deposits. Although the chapter is mostly focused on the radiogenic (Pb, Os) and heavy stable (Fe, Cu, Zn) isotopes of metallic elements, we complement the discussion highlighting also the power of stable isotopes of light elements, which are major to significant components of hydrothermal fluids and rocks (e.g., H, B, C, N, O, S), as well as of radiogenic isotopes of elements (Sr, Nd, Hf ) that are useful in tracing fluid/magma sources and their interaction with the host rocks. In the first part of this chapter we discuss general aspects of isotopes clarifying the differences between stable non-radiogenic and stable radiogenic isotopes and, consequently, their different applicability to metallogenic studies. Due to their properties, stable non-radiogenic isotopes record mass-dependent fractionation that occur in many reactions associated with the formation of mineral deposits. Mass-dependent fractionation of stable non-radiogenic isotopes occurs both under equilibrium and non-equilibrium (kinetic) conditions of the reactions leading to ore mineral deposition and is controlled by various physico-chemical parameters, like, among the principal ones, temperature, oxygen fugacity, and biological activity. Therefore, stable non-radiogenic isotopes can inform us about the physico-chemical and, eventually, biological processes that control ore mineral deposition and also on the sources of some metals (e.g., transition metal isotopes of elements like Fe, Cu, Zn) or of the fluids (e.g., H, C, O, N, S isotopes) and even of metal ligands (e.g., S, Cl). We conclude the first part of the chapter providing some hints on the strategy of sampling and on the instrumentation related to isotopic studies. In the second part we discuss radioactive-radiogenic isotope systems and their applications in metallogenic studies of metallic mineral deposits. Stable radiogenic isotopes are characterized by relative variations that are controlled, in each geological system, by the addition of a radiogenic component of an isotope, derived from the decay of a radioactive parent, to the same radiogenic isotope already present in the Earth since its formation  4.55 Gyr ago. This relative variation is usually expressed as the ratio of a radiogenic isotope of an element to a non-radiogenic isotope of the same element. The ratio of these two isotopes has increased since the Earth formation and the magnitude of its variations depends on the radioactive/ radiogenic isotope ratios in different geological systems and on the time elapsed since the system has formed. The Earth is  4.55 Gyr old and has evolved from an initially homogeneous isotopic composition to reservoirs (e.g., mantle, crust) and crustal rocks with very variable radioactive/radiogenic isotope ratios due to magmatic, metamorphic, weathering, atmospheric and biologic processes, among others. This has resulted in extremely large variations of radiogenic isotopes in rocks and reservoirs of the Earth which can track various geological processes. In ore geology, stable radiogenic isotopes are best suited for tracing metal (e.g., Pb, Os) sources from different rocks and reservoirs (e.g., mantle, upper crust, lower crust), fluid-rock interactions (i.e., the hydrothermal plumbing system), or magma-host rock interactions (e.g., host rock assimilation by magmas associated with magmatic-hydrothermal deposits). Radioactive-radiogenic isotope systems allow us to determine also absolute ages of suitable minerals that are found in mineral deposits. This is an essential information in metallogeny that allows us to link the formation of a mineral deposit to a specific geological process and/or to specific periods of the Earth’s history. We discuss various dating methods that are extensively applied to date mineral deposits. These methods can be subdivided into those that allow a direct dating of ore minerals (e.g., RedOs dating of molybdenite, UdPb dating of cassiterite) and those that allow dating of minerals that are demonstrably related with the mineralization (e.g., UdPb dating of zircon from magmatic rocks associated with magmatic-hydrothermal deposits; Ar/Ar dating of K-bearing minerals resulting from alteration associated with various types of mineral deposits). We discuss pros and cons of using these various methods and also mention methods that are less used (because potentially less accurate and precise), but sometimes represent the only possibility to provide an age to deposit types that are notoriously difficult to date (e.g., MVT and Carlin-type deposits). We highlight the power of both stable radiogenic and non-radiogenic isotopes in unravelling the genesis of metallic mineral deposits through a series of conceptual and real examples applied to a broad range of mineral deposit types such as porphyry systems (i.e., porphyry deposits, high- and intermediate-sulfidation epithermal deposits, skarn, carbonate replacement deposits, sediment-hosted Au deposits), low-sulfidation epithermal deposits, IOCG deposits, ortho-magmatic deposits, volcanic-hosted massive sulfide deposits (VHMS), sediment-hosted deposits (stratiform copper, MVT), and supergene deposits. In the third part of the chapter, we discuss the use of transition metal stable non-radiogenic isotopes to mineral deposits. Although in its infancy, the application of transition metal isotopes to mineral deposit investigation is quickly growing because these isotopes allow us to address different aspects of the formation of mineral deposits compared to radiogenic isotopes. In particular, isotopes of transition metals (like stable isotopes of light elements) undergo mass-dependent fractionation processes that may be associated with different types of equilibrium and non-equilibrium chemical, physical and biological reactions occurring during the formation of mineral deposits. We focus on the applications of the isotopes of Cu, Fe and Zn to various deposit types, because isotopes of these transition metals are those that have been most extensively used in mineral deposit studies. Mass-independent fractionation may also occur for isotopes of some elements and could be a developing field that has not yet been extensively explored in the study of mineral deposits. 

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3. Electrochemically induced metal- vs. ligand-based redox changes in mackinawite: identification of a Fe ³⁺ - and polysulfide-containing intermediate

   https://doi.org/10.1039/d1dt01684a  

   Sanden, Sebastian A.; Szilagyi, Robert K.; Li, Yamei; Kitadai, Norio; Webb, Samuel M.; Yano, Takaaki; Nakamura, Ryuhei; Hara, Masahiko; McGlynn, Shawn E. (August 2021, Dalton Transactions)

   Under anaerobic conditions, ferrous iron reacts with sulfide producing FeS, which can then undergo a temperature, redox potential, and pH dependent maturation process resulting in the formation of oxidized mineral phases, such as greigite or pyrite. A greater understanding of this maturation process holds promise for the development of iron-sulfide catalysts, which are known to promote diverse chemical reactions, such as H + , CO 2 and NO 3 − reduction processes. Hampering the full realization of the catalytic potential of FeS, however, is an incomplete knowledge of the molecular and redox processess ocurring between mineral and nanoparticulate phases. Here, we investigated the chemical properties of iron-sulfide by cyclic voltammetry, Raman and X-ray absorption spectroscopic techniques. Tracing oxidative maturation pathways by varying electrode potential, nanoparticulate n (Fe 2+ S 2− ) (s) was found to oxidize to a Fe 3+ containing FeS phase at −0.5 V vs. Ag/AgCl (pH = 7). In a subsequent oxidation, polysulfides are proposed to give a material that is composed of Fe 2+ , Fe 3+ , S 2− and polysulfide (S n 2− ) species, with its composition described as Fe 2+ 1−3 x Fe 3+ 2 x S 2− 1− y (S n 2− ) y . Thermodynamic properties of model compounds calculated by density functional theory indicate that ligand oxidation occurs in conjunction with structural rearrangements, whereas metal oxidation may occur prior to structural rearrangement. These findings together point to the existence of a metastable FeS phase located at the junction of a metal-based oxidation path between FeS and greigite (Fe 2+ Fe 3+ 2 S 2− 4 ) and a ligand-based oxidation path between FeS and pyrite (Fe 2+ (S 2 ) 2− ). 

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4. Serpentinization: Connecting Geochemistry, Ancient Metabolism and Industrial Hydrogenation

   https://doi.org/10.3390/life8040041  

   Preiner, Martina; Xavier, Joana C; Sousa, Filipa L; Zimorski, Verena; Neubeck, Anna; Lang, Susan Q; Greenwell, H Chris; Kleinermanns, Karl; Tüysüz, Harun; McCollom, Tom M; et al (December 2018, Life)

   Rock–water–carbon interactions germane to serpentinization in hydrothermal vents have occurred for over 4 billion years, ever since there was liquid water on Earth. Serpentinization converts iron(II) containing minerals and water to magnetite (Fe3O4) plus H2. The hydrogen can generate native metals such as awaruite (Ni3Fe), a common serpentinization product. Awaruite catalyzes the synthesis of methane from H2 and CO2 under hydrothermal conditions. Native iron and nickel catalyze the synthesis of formate, methanol, acetate, and pyruvate—intermediates of the acetyl-CoA pathway, the most ancient pathway of CO2 fixation. Carbon monoxide dehydrogenase (CODH) is central to the pathway and employs Ni0 in its catalytic mechanism. CODH has been conserved during 4 billion years of evolution as a relic of the natural CO2-reducing catalyst at the onset of biochemistry. The carbide-containing active site of nitrogenase—the only enzyme on Earth that reduces N2—is probably also a relic, a biological reconstruction of the naturally occurring inorganic catalyst that generated primordial organic nitrogen. Serpentinization generates Fe3O4 and H2, the catalyst and reductant for industrial CO2 hydrogenation and for N2 reduction via the Haber–Bosch process. In both industrial processes, an Fe3O4 catalyst is matured via H2-dependent reduction to generate Fe5C2 and Fe2N respectively. Whether serpentinization entails similar catalyst maturation is not known. We suggest that at the onset of life, essential reactions leading to reduced carbon and reduced nitrogen occurred with catalysts that were synthesized during the serpentinization process, connecting the chemistry of life and Earth to industrial chemistry in unexpected ways. 

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5. Metal mobilization from thawing permafrost to aquatic ecosystems is driving rusting of Arctic streams

   https://doi.org/10.1038/s43247-024-01446-z  

   O’Donnell, Jonathan A; Carey, Michael P; Koch, Joshua C; Baughman, Carson; Hill, Kenneth; Zimmerman, Christian E; Sullivan, Patrick F; Dial, Roman; Lyons, Timothy; Cooper, David J; et al (December 2024, Communications Earth & Environment)

   Abstract Climate change in the Arctic is altering watershed hydrologic processes and biogeochemistry. Here, we present an emergent threat to Arctic watersheds based on observations from 75 streams in Alaska’s Brooks Range that recently turned orange, reflecting increased loading of iron and toxic metals. Using remote sensing, we constrain the timing of stream discoloration to the last 10 years, a period of rapid warming and snowfall, suggesting impairment is likely due to permafrost thaw. Thawing permafrost can foster chemical weathering of minerals, microbial reduction of soil iron, and groundwater transport of metals to streams. Compared to clear reference streams, orange streams have lower pH, higher turbidity, and higher sulfate, iron, and trace metal concentrations, supporting sulfide mineral weathering as a primary mobilization process. Stream discoloration was associated with dramatic declines in macroinvertebrate diversity and fish abundance. These findings have considerable implications for drinking water supplies and subsistence fisheries in rural Alaska. 

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