Abstract Estimating and monitoring plant population size is fundamental for ecological research, as well as conservation and restoration programs. High‐resolution imagery has potential to facilitate such estimation and monitoring. However, remotely sensed estimates typically have higher uncertainty than field measurements, risking biased inference on population status.We present a model that accounts for false negative (missed plants) and false positive (misclassified or double‐counted plants) error in counts from high‐resolution imagery via integration with ground data. We apply it to estimate the abundance of a foundational shrub species in post‐wildfire landscapes in the western United States. In these landscapes, plant recruitment is crucial for ecological recovery but locally patchy, motivating the use of spatially extensive measurements from unoccupied aerial systems (UAS). Integrating >16 ha of UAS imagery with >700 georeferenced field plots, we fit our model to generate insights into the prevalence and drivers of observation errors associated with classification algorithms used to distinguish individual plants, relationships between abundance and landscape context, and to generate spatially explicit maps of shrub abundance.Raw counts of plant abundance in high‐resolution imagery resulted in substantial false negative and false positive observation errors. The probability of detecting (p) adult plants (0.25 m tall) varied between sites within 0.52 < < 0.82, whereas the detection of smaller plants (<0.25 m) was lower, 0.03 < < 0.3. On average, we estimate that 19% of all detected plants were false positive errors, which varied spatially in relation to topographic predictors. Abundance declined toward the interior of previous wildfires and was positively associated with terrain roughness.Our study demonstrates that integrated models accounting for imperfect detection improve estimates of plant population abundance derived from inherently imperfect UAS imagery. We believe such models will further improve inference on plant population dynamics—relevant to restoration, wildlife habitat and related objectives—and echo previous calls for remote sensing applications to better differentiate between ecological and observational processes.
more »
« less
Demography with drones: detecting growth and survival of shrubs with unoccupied aerial systems
Large‐scale disturbances, such as megafires, motivate restoration at equally large extents. Measuring the survival and growth of individual plants plays a key role in current efforts to monitor restoration success. However, the scale of modern restoration (e.g., >10,000 ha) challenges measurements of demographic rates with field data. In this study, we demonstrate how unoccupied aerial system (UAS) flights can provide an efficient solution to the tradeoff of precision and spatial extent in detecting demographic rates from the air. We flew two, sequential UAS flights at two sagebrush (Artemisia tridentata) common gardens to measure the survival and growth of individual plants. The accuracy of Bayesian‐optimized segmentation of individual shrub canopies was high (73–95%, depending on the year and site), and remotely sensed survival estimates were within 10% of ground‐truthed survival censuses. Stand age structure affected remotely sensed estimates of growth; growth was overestimated relative to field‐based estimates by 57% in the first garden with older stands, but agreement was high in the second garden with younger stands. Further, younger stands (similar to those just after disturbance) with shorter, smaller plants were sometimes confused with other shrub species and bunchgrasses, demonstrating a need for integrating spectral classification approaches that are increasingly available on affordable UAS platforms. The older stand had several merged canopies, which led to an underestimation of abundance but did not bias remotely sensed survival estimates. Advances in segmentation and UAS structure from motion photogrammetry will enable demographic rate measurements at management‐relevant extents.
more »
« less
- Award ID(s):
- 2207158
- PAR ID:
- 10487586
- Publisher / Repository:
- Wiley-Blackwell
- Date Published:
- Journal Name:
- Restoration Ecology
- Volume:
- 32
- Issue:
- 4
- ISSN:
- 1061-2971
- Format(s):
- Medium: X
- Sponsoring Org:
- National Science Foundation
More Like this
-
-
Abstract Interactions between neighboring plants are critical for biodiversity maintenance in plant populations and communities. Intraspecific trait variation and genome duplication are common in plant species and can drive eco‐evolutionary dynamics through genotype‐mediated plant–plant interactions. However, few studies have examined how species‐wide intraspecific variation may alter interactions between neighboring plants. We investigate how subspecies and ploidy variation in a genetically diverse species, big sagebrush (Artemisia tridentata), can alter the demographic outcomes of plant interactions. Using a replicated, long‐term common garden experiment that represents range‐wide diversity ofA. tridentata, we ask how intraspecific variation, environment, and stand age mediate neighbor effects on plant growth and survival. Spatially explicit models revealed that ploidy variation and subspecies identity can mediate plant–plant interactions but that the effect size varied in time and across experimental sites. We found that demographic impacts of neighbor effects were strongest during early stages of stand development and in sites with greater growth rates. Within subspecies, tetraploid populations showed greater tolerance to neighbor crowding compared to their diploid variants. Our findings provide evidence that intraspecific variation related to genome size and subspecies identity impacts spatial demography in a genetically diverse plant species. Accounting for intraspecific variation in studies of conspecific density dependence will improve our understanding of how local populations will respond to novel genotypes and biotic interaction regimes. As introduction of novel genotypes into local populations becomes more common, quantifying demographic processes in genetically diverse populations will help predict long‐term consequences of plant–plant interactions.more » « less
-
Abstract The Arctic is rapidly warming, and tundra vegetation community composition is changing from small, prostrate shrubs to taller, erect shrubs in some locations. Across much of the Arctic, the sensitivity of shrub secondary growth, as measured by growth ring width, to climate has changed with increased warming, but it is not fully understood how shrub age contributes to shifts in climate sensitivity.We studied Siberian alder,Alnus viridisssp.fruticosa, a large nitrogen‐fixing shrub that has responded to climate warming with northward range expansion over the last 50 years. We used serial sectioning of 26 individual shrubs and 94 cross‐sections to generate a 98‐year growth ring chronology, including one 142‐year‐old, Siberian alder in Northern Alaska. We tested how secondary growth sensitivity to climate has changed over the past century (1920–2017) and how shrub age affects climate sensitivity of alder growth through time.We found that over time, alder growth as expressed by the stand chronology became more sensitive to July mean monthly air temperature. Older shrubs displayed higher sensitivity to June and July temperature than younger alders. However, during the first 30 years of growth of any shrub, temperature sensitivity did not differ among individuals. In addition, the June temperature sensitivity of growth series from individual cross‐sections depended on the age of the attached shrub.Our results suggest that age contributes to climate sensitivity, likely through modifying internal shrub carbon budgets by changing size and reducing alder's dependence on N‐fixation over time. Older, more sensitive alder may enhance C and N‐cycling while having greater recruitment potential. Linking alder age to climate sensitivity, recruitment and total N‐inputs will enable us to better predict ecosystem carbon and nitrogen cycling in a warmer Arctic. Read the freePlain Language Summaryfor this article on the Journal blog.more » « less
-
Abstract Warming temperatures and rising moisture deficits are expected to increase the rates of background tree mortality–low amounts of tree mortality (~0.5%–2% year−1), characterizing the forest demographic processes in the absence of abrupt, coarse‐scale disturbance events (e.g. fire). When compounded over multiple decades and large areas, even minor increases in background tree mortality (e.g. <0.5% year−1) can cause changes to forest communities and carbon storage potential that are comparable to or greater than those caused by disturbances.We examine how temporal variability in rates of background tree mortality for four subalpine conifers reflects variability in climate and climate teleconnections using observations of tree mortality from 1982 to 2019 at Niwot Ridge, Colorado, USA. Individually marked trees (initial population 5,043) in 13 permanent plots—located across a range of site conditions, stand ages and species compositions—were censused for new mortality nine times over 37 years.Background tree mortality was primarily attributed to stress from unfavourable climate and competition (71.2%) and bark beetle activity (23.3%), whereas few trees died from wind (5.3%) and wildlife impacts (0.2%). Mean annualized tree mortality attributed to tree stress and bark beetles more than tripled across all stands between initial censuses (0.26% year−1, 1982–1993/1994) and recent censuses (0.82% year−1, 2008–2019). Higher rates of tree mortality were related to warmer maximum summer temperatures, greater summer moisture deficits, and negative anomalies in ENSO (La Niña), with greater effects of drought in some subpopulations (tree size, age and species). For example, in older stands (>250 years), larger and older trees were more likely to die than smaller and younger trees. Differences in tree mortality rates and sensitivity to climate among subpopulations that varied by stand type may lead to unexpected shifts in stand composition and structure.Synthesis. A strong relationship between higher rates of tree mortality and warmer, drier summer climate conditions implies that climate warming will continue to increase background mortality rates in subalpine forests. Combined with increases in disturbances and declining frequency of moist‐cool years suitable for seedling establishment, increasing rates of tree mortality have the potential to drive declines in subalpine tree populations.more » « less
-
Abstract Understanding interactions between environmental stress and genetic variation is crucial to predict the adaptive capacity of species to climate change. Leaf temperature is both a driver and a responsive indicator of plant physiological response to thermal stress, and methods to monitor it are needed. Foliar temperatures vary across leaf to canopy scales and are influenced by genetic factors, challenging efforts to map and model this critical variable. Thermal imagery collected using unoccupied aerial systems (UAS) offers an innovative way to measure thermal variation in plants across landscapes at leaf‐level resolutions. We used a UAS equipped with a thermal camera to assess temperature variation among genetically distinct populations of big sagebrush (Artemisia tridentata), a keystone plant species that is the focus of intensive restoration efforts throughout much of western North America. We completed flights across a growing season in a sagebrush common garden to map leaf temperature relative to subspecies and cytotype, physiological phenotypes of plants, and summer heat stress. Our objectives were to (1) determine whether leaf‐level stomatal conductance corresponds with changes in crown temperature; (2) quantify genetic (i.e., subspecies and cytotype) contributions to variation in leaf and crown temperatures; and (3) identify how crown structure, solar radiation, and subspecies‐cytotype relate to leaf‐level temperature. When considered across the whole season, stomatal conductance was negatively, non‐linearly correlated with crown‐level temperature derived from UAS. Subspecies identity best explained crown‐level temperature with no difference observed between cytotypes. However, structural phenotypes and microclimate best explained leaf‐level temperature. These results show how fine‐scale thermal mapping can decouple the contribution of genetic, phenotypic, and microclimate factors on leaf temperature dynamics. As climate‐change‐induced heat stress becomes prevalent, thermal UAS represents a promising way to track plant phenotypes that emerge from gene‐by‐environment interactions.more » « less
An official website of the United States government
