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1. In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment

   https://doi.org/10.1093/g3journal/jkad126  

   Kurbessoian, Tania; Murante, Daniel; Crocker, Alex; Hogan, Deborah A; Stajich, Jason E (June 2023, G3: Genes, Genomes, Genetics)

   Nowrousian, M (Ed.)

   Abstract Individuals with cystic fibrosis (CF) are susceptible to chronic lung infections that lead to inflammation and irreversible lung damage. While most respiratory infections that occur in CF are caused by bacteria, some are dominated by fungi such as the slow-growing black yeast Exophiala dermatitidis. Here, we analyze isolates of E. dermatitidis cultured from two samples, collected from a single subject 2 years apart. One isolate genome was sequenced using long-read Nanopore technology as an in-population reference to use in comparative single nucleotide polymorphism and insertion–deletion variant analyses of 23 isolates. We then used population genomics and phylo-genomics to compare the isolates to each other as well as the reference genome strain E. dermatitidis NIH/UT8656. Within the CF lung population, three E. dermatitidis clades were detected, each with varying mutation rates. Overall, the isolates were highly similar suggesting that they were recently diverged. All isolates were MAT 1-1, which was consistent with their high relatedness and the absence of evidence for mating or recombination between isolates. Phylogenetic analysis grouped sets of isolates into clades that contained isolates from both early and late time points indicating there are multiple persistent lineages. Functional assessment of variants unique to each clade identified alleles in genes that encode transporters, cytochrome P450 oxidoreductases, iron acquisition, and DNA repair processes. Consistent with the genomic heterogeneity, isolates showed some stable phenotype heterogeneity in melanin production, subtle differences in antifungal minimum inhibitory concentrations, and growth on different substrates. The persistent population heterogeneity identified in lung-derived isolates is an important factor to consider in the study of chronic fungal infections, and the analysis of changes in fungal pathogens over time may provide important insights into the physiology of black yeasts and other slow-growing fungi in vivo. 

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2. Dual functions of CO ₂ molecular activation and 4f levels as electron transport bridges in erbium single atom composite photocatalysts therefore enhancing visible-light photoactivities

   https://doi.org/10.1039/D1TA02926F  

   Chen, Qiuyu; Gao, Guoyang; Zhang, Yanzhou; li, Yini; Zhu, Hongyang; Zhu, Peifen; Qu, Yang; Wang, Guofeng; Qin, Weiping (July 2021, Journal of Materials Chemistry A)

   Only when the interfacial charge separation is enhanced and the CO 2 activation is improved, can the heterojunction nanocomposite photocatalyst be brought into full play for the CO 2 reduction reaction (CO 2 RR). Here, Er 3+ single atom composite photocatalysts were successfully constructed based on both the special role of Er 3+ single atoms and the special advantages of the SrTiO 3 :Er 3+ /g-C 3 N 4 heterojunction in the field of photocatalysis for the first time. As we expected, the SrTiO 3 :Er 3+ /g-C 3 N 4 (22.35 and 16.90 μmol g −1 h −1 for CO and CH 4 ) exhibits about 5 times enhancement in visible-light photocatalytic activity compared to pure g-C 3 N 4 (4.60 and 3.40 μmol g −1 h −1 for CO and CH 4 ). In particular, the photocatalytic performance of SrTiO 3 :Er 3+ /g-C 3 N 4 is more than three times higher than that of SrTiO 3 /g-C 3 N 4 . From Er 3+ fluorescence quenching measurements, photoelectrochemical studies, transient PL studies and DFT calculations, it is verified that a small fraction of surface doping of Er 3+ formed Er single-atoms on SrTiO 3 building an energy transfer bridge between the interface of SrTiO 3 and g-C 3 N 4 , resulting in enhanced interfacial charge separation. Aberration-corrected high-angle annular dark-field scanning transmission electron microscopy (AC HAADF-STEM) and adsorption energy calculations demonstrated that the exposed Er single-atoms outside the interface on SrTiO 3 preferentially activate the adsorbed CO 2 , leading to the high photoactivity for the CO 2 RR. A novel enhanced photocatalytic mechanism was proposed, in which Er single-atoms play dual roles of an energy transfer bridge and activating CO 2 to promote charge separation. This provides new insights and feasible routes to develop highly efficient photocatalytic materials by engineering rare-earth single-atom doping. 

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3. Effect of Carbon Doping on CO ₂ ‐Reduction Activity of Single Cobalt Sites in Graphitic Carbon Nitride

   https://doi.org/10.1002/cnma.202100164  

   Huang, Peipei; Huang, Jiahao; Li, Junying; Zhang, Lei; He, Jie; Caputo, Christine_A; Frenkel, Anatoly_I; Li, Gonghu (June 2021, ChemNanoMat)

   Abstract Single‐atom catalysts have demonstrated interesting activity in a variety of applications. In this study, we prepared single Co²⁺sites on graphitic carbon nitride (C₃N₄), which was doped with carbon for enhanced activity in visible‐light CO₂reduction. The synthesized materials were characterized with a variety of techniques, including microscopy, X‐ray powder diffraction, UV‐vis spectroscopy, infrared spectroscopy, photoluminescence spectroscopy, and X‐ray absorption spectroscopy. Doping C₃N₄with carbon was found to have profound effect on the photocatalytic activity of the single Co²⁺sites. At relatively low levels, carbon doping enhanced the photoresponse of C₃N₄in the visible region and improved charge separation upon photoactivation, thereby enhancing the photocatalytic activity. High levels of carbon doping were found to be detrimental to the photocatalytic activity of the single Co²⁺sites by altering the structure of C₃N₄and generating defect sites responsible for charge recombination. 

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4. Improved synthesis and transient absorption spectroscopy of CuBiW ₂ O ₈ with demonstration of visible-light-driven photocatalysis and mechanistic insights

   https://doi.org/10.1039/D2TA03086A  

   Yilmaz Akkaya, Ceren; Dombrowski, James P.; Colin-Ulloa, Erika; Titova, Lyubov V.; Lawton, Timothy J.; Alexander, Todd E.; Brack, Eric; Drew, Christopher; Rao, Pratap M. (November 2022, Journal of Materials Chemistry A)

   CuBiW 2 O 8 (CBTO), with a band gap of 1.9–2.0 eV, responds to a wide region of the electromagnetic spectrum, which makes it a good candidate for solar-driven photocatalytic energy conversion and water treatment. We have previously demonstrated a Cu-rich solid state approach that enables the synthesis of CBTO accompanied by thermodynamically stable Bi 2 WO 6 impurity. Here, we describe an improved synthesis protocol with decreased impurity and synthesis time, and the first demonstration of CBTO as a functional material using photocatalytic Cr( vi ) photoreduction as a probe reaction. Transient absorption spectroscopy (TAS) was performed to investigate the ultrafast dynamics of the charge carriers after photoexcitation. The presence of two populations of photoexcited carriers was found, including short-lived free carriers with ∼10 ps lifetime and long-lived shallowly-trapped carriers with ∼1 ns lifetime. Together with carrier mobilities measured in our previous study, the new TAS results indicate that the long-lived charges have diffusion lengths similar to the CBTO particle size and were likely responsible for the majority of the photocatalytic activity. High activity of CBTO for Cr( vi ) photoreduction (∼100% reduction of 5 mg L −1 of Cr( vi ) in 15 minutes) was demonstrated, which clearly establishes the promise of this novel oxide for visible light-driven photocatalytic applications. Radical quenching experiments indicate that both ˙OH radicals and O 2 ˙ − radicals are produced by CBTO and are involved in the photoreduction of Cr( vi ). Repeated photocatalysis tests and analysis of the surface after the reaction show that CBTO is a stable and potentially reusable catalyst. Insights gained from correlating the synthesis conditions, carrier dynamics, and reactive species suggests that CBTO prepared with the improved protocol would be a favorable choice for photocatalytic reactions such as water decontamination from organic pollutants, water splitting, and solar fuel generation using visible light. 

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5. Strategies for accessing photosensitizers with extreme redox potentials

   https://doi.org/10.1063/5.0084554  

   Kim, Dooyoung; Teets, Thomas S. (June 2022, Chemical Physics Reviews)

   Photoredox catalysis has been prominent in many applications, including solar fuels, organic synthesis, and polymer chemistry. Photocatalytic activity directly depends on the photophysical and electrochemical properties of photocatalysts in both the ground state and excited state. Controlling those properties, therefore, is imperative to achieve the desired photocatalytic activity. Redox potential is one important factor that impacts both the thermodynamic and kinetic aspects of key elementary steps in photoredox catalysis. In many challenging reactions in organic synthesis, high redox potentials of the substrates hamper the reaction, leading to slow conversion. Thus, the development of photocatalysts with extreme redox potentials, accompanied by potent reducing or oxidizing power, is required to execute high-yielding thermodynamically demanding reactions. In this review, we will introduce strategies for accessing extreme redox potentials in photocatalytic transformations. These include molecular design strategies for preparing photosensitizers that are exceptionally strong ground-state or excited-state reductants or oxidants, highlighting both organic and metal-based photosensitizers. We also outline methodological approaches for accessing extreme redox potentials, using two-photon activation, or combined electrochemical/photochemical strategies to generate potent redox reagents from precursors that have milder potentials. 

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